Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00694 ATGGGAAGGAATTCTTCATTGCAACTCATTGTTTGCTTCTATGTCCTACACTTGTTAACATGGTTAAGGGTTCAAAGATGCCACTGCTTAGTTCCCCAAAGGTCTATTATGAGCATAGGTGGTGTTCTTGATTTAGTTTCATTAATGGGAAAACAACAACAGATAGGAATGGAAATTGCAGTGCAAGAATTCAACAACCATTTGGGTTTCCCCAAGATGGATTTGAAGATTAAGGATTCACATGGGAATTCAGCTCAAGTAATTGCAAGTGTTATGGATCTCTCACAGAGCAACCAAGGGCTAGCCATCATTGGAACTATTACACACAATGAAGCAAATTTGGCAAGTGAATTCAGTGACACCATAAAGAACATTCCTATTTTGTCTCTAACATCATCTGCGGTCAGACCAGAATTATTATCTCCTAGATTGCCACATTTCATCCAAGTAGGATTACTACTTAGCCTCTCTTATTCTCTTAGACATGTTGGTTCTGAGATTGAAAACCACTTAGCTTTTCCTTCCTTATCAACTCTTTCAGACCCAAAAACTACAATTGAAAATGAGCTTAATAAGCTGAAAAAGAAGAGTAATAGGGTTTTCTTAATTGTTCATTCTTCTTTAGAGATTGCCAGCATGGTTTGTGAGAAAGCAAAGCAAATAGGTTTGATGGAAAAAGGTTCTGTGTGGATTATCCCAGATGAGGTTGCAGGCTTGCTTGATGCAGTTAACTCTTCTGTTATCTTGAACATGCAAGGTATTGTAGGATTTAAAACACACTTCATAGAAACGAGTGAGGCTTTTACAAAGTTTAAATTCAAATTCCAAAGAAGGTTTGCACTAGAATACCCTGAAGAAGATAACATTCACCCAAGTATCTTTGCACTTCAAGCATATGATGCAACTTGGGCTATTGTTGACGCTGCAAATAAATCATCACAAAGTAAGTTCAGTCTTGAACAATTCTCAGAAAATATTTTGTCAAGTAATTTTGACAGACTAAGTGGAAAGACTTTATCAAAGAATGGGCAATTGCTTCAACCGCCATCCTTCAACATAATTAATGTGATAGGGAAAAGTTATAGAGAAATGGCGTTTTGGGCTCCAACAATTGGTTTTTCCAAGAACATTGTTAACCATAAGATAATGGAAATAAACTTAAATAATGATTCTAGTGAAGTTTTTAGAACAATTTATTGGCCTGGAGGCTTGCAATTGGTTCCGAAGGGTCACAATAATGAGGAAAAGTCATTGAAAATAGCTATACCTTCCAATGGTGCCTTTACTCAATTTGTGAATGTGACATATGATCAGAGCAAAAATGAAACTTCCATCACTGGTTTCTCTATCAGTGTCTTTGAAGCAGCTGTCAAACATTTACCTTATGATTTACATTACAATTTTGTTCCCTTCAGTGGCTCCTACGATGAAATGGTTGATCAAGTCTACAATAAGACATGGGATGCTGCTGTTGGTGATACATCAATAGTTGCATATAGATATCATCTAGTGGACTTCTCACAACCTTATGTTGAATCTGGCCTCCACATGGTGGTTACTGAACAACCAGCAAAATCAAAAGAAGCATGGATGTTTTTGGATGCCTTTACAAAAGAGATGTGGCTGACAATGGCAGCTATGCATATTTTTGTAGGAGTTGTTATTTGGTTGATTGAACGAGAAGAAAATGCAGATCTAAGGGGATTTGGCTCCATTCTTTGGTTTTTAGTCACTGTACTATTTTATGCACATAGAGAACCAATAAGAAGACCATTGGCTCGAACCGTGTTGGCGCCTTGGCTAATTGCTATTTTCATTGTGACAAATAGTTTCATAGCAAGTTTGACATCCATAACTATTGCACAAGTAAAGCCATCTGTGTTAAATATTCAGACCCTTAAAGAAAGAAACTCACCAGTTGGGTGTGATGGAAATTCATTTATTGTGAAGCATTTGACAGAAGCACTAAAATTCAAGCCTGAGAACATTAGGAAAATAAATTCCATGAGTGACTACCTTGCTGCCTTTGAGAACAAGGATATAGAAGCTGCCTTCTTTGTCGCACCTCATGCAAAAGTCTTTCTAGCAAAGTACTCATGTATGGGCCTCATCAAAGCAGGGAACACTTTCAGGCTTGGTGGCTTTGGTTTTGTGGGTTTCTCTCCTCTCATTGTCACTGATTTTTGA 2187 0.3745 MGRNSSLQLIVCFYVLHLLTWLRVQRCHCLVPQRSIMSIGGVLDLVSLMGKQQQIGMEIAVQEFNNHLGFPKMDLKIKDSHGNSAQVIASVMDLSQSNQGLAIIGTITHNEANLASEFSDTIKNIPILSLTSSAVRPELLSPRLPHFIQVGLLLSLSYSLRHVGSEIENHLAFPSLSTLSDPKTTIENELNKLKKKSNRVFLIVHSSLEIASMVCEKAKQIGLMEKGSVWIIPDEVAGLLDAVNSSVILNMQGIVGFKTHFIETSEAFTKFKFKFQRRFALEYPEEDNIHPSIFALQAYDATWAIVDAANKSSQSKFSLEQFSENILSSNFDRLSGKTLSKNGQLLQPPSFNIINVIGKSYREMAFWAPTIGFSKNIVNHKIMEINLNNDSSEVFRTIYWPGGLQLVPKGHNNEEKSLKIAIPSNGAFTQFVNVTYDQSKNETSITGFSISVFEAAVKHLPYDLHYNFVPFSGSYDEMVDQVYNKTWDAAVGDTSIVAYRYHLVDFSQPYVESGLHMVVTEQPAKSKEAWMFLDAFTKEMWLTMAAMHIFVGVVIWLIEREENADLRGFGSILWFLVTVLFYAHREPIRRPLARTVLAPWLIAIFIVTNSFIASLTSITIAQVKPSVLNIQTLKERNSPVGCDGNSFIVKHLTEALKFKPENIRKINSMSDYLAAFENKDIEAAFFVAPHAKVFLAKYSCMGLIKAGNTFRLGGFGFVGFSPLIVTDF 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00694 728 Gene3D - 33 152 - -
Car03g00694 728 Gene3D - 413 528 - -
Car03g00694 728 CDD GluR_Plant 416 728 - -
Car03g00694 728 Pfam Ligand-gated ion channel 538 646 IPR001320 GO:0015276|GO:0016020
Car03g00694 728 SUPERFAMILY Periplasmic binding protein-like II 400 718 - -
Car03g00694 728 Gene3D - 153 278 - -
Car03g00694 728 PANTHER GLUTAMATE RECEPTOR 33 725 - -
Car03g00694 728 SMART GluR_14 417 722 IPR001320 GO:0015276|GO:0016020
Car03g00694 728 Pfam Bacterial extracellular solute-binding proteins, family 3 442 700 IPR001638 -
Car03g00694 728 Pfam Receptor family ligand binding region 185 357 IPR001828 -
Car03g00694 728 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 725 - -
Car03g00694 728 SUPERFAMILY Periplasmic binding protein-like I 38 409 IPR028082 -
Car03g00694 728 Gene3D - 529 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00694 Car-Chr3 36041981 36058714 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00694 33 717 Ion Channels AT2G29100 30.093 5.70e-97 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00694 - - mtr:MTR_5g059920 1069.68