Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00665 ATGTCACGGCGAGGTACTGCAGAAAAAAAAACCGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTAGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGCACAAAGCTGATTCGGAATTTTATTTCATTTCAAGGCATCTTGTATCCTTGTGTTTCATATTCGCCAGGAGTTGCCTCCCAGAAATATAATATAGTCCTATCACCACTCGCGTCAATCCCACAAGCCTCTTATCCACTCTTGATTCTCATTGGATCTCGTCATCAAAATAGAAAAATTCACATTGGGTTTAGGGATAATCAGGTTCGAACTGATGACTTCCACCATGTCAAGGCAATTACCGACATGAAAAGGATGATTCATTCGGATCGATATGAGAGTCCCCAACCGCATTGCATTGCCAGAACCCGTGTTCTATATTGGAAAGAGGTTGACCTCCTTGCTTTTGTCATGTTACAATCCTCTTGCCACCTTTCTCCTCGGTCCACAGCGACAAAATGTCATCGAAAGGATCTCGAAGACCCACCAAAGCACGAAAGCCGGGATCTTTCAGAAAATAGATTCCTATTCAAAAGTGGCAGTAAGGATGACTTATCTGTCAACTTTTCCACTATTACCCCTAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAAATATGGGGCGAAAAAGCCAAAATAA 1002 0.4082 MSRRGTAEKKTAKSDPIYRNRLVNMLVNRIMKHGKKSLAYQIIYRAMKRIQQKTETNPLSVLRQAIRRVTPDIAVKARRTKLIRNFISFQGILYPCVSYSPGVASQKYNIVLSPLASIPQASYPLLILIGSRHQNRKIHIGFRDNQVRTDDFHHVKAITDMKRMIHSDRYESPQPHCIARTRVLYWKEVDLLAFVMLQSSCHLSPRSTATKCHRKDLEDPPKHESRDLSENRFLFKSGSKDDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGAKKPK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00665 333 Gene3D - 206 333 IPR012340 -
Car03g00665 333 CDD Ribosomal_S12 249 320 IPR005679 GO:0003735|GO:0006412|GO:0015935
Car03g00665 333 Gene3D Ribosomal protein S7 domain 1 90 IPR036823 -
Car03g00665 333 SUPERFAMILY Nucleic acid-binding proteins 236 333 IPR012340 -
Car03g00665 333 ProSitePatterns Ribosomal protein S7 signature. 20 46 IPR020606 GO:0003723|GO:0003735|GO:0006412
Car03g00665 333 SUPERFAMILY Ribosomal protein S7 1 81 IPR036823 -
Car03g00665 333 Pfam Ribosomal protein S12/S23 241 333 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g00665 333 MobiDBLite consensus disorder prediction 209 229 - -
Car03g00665 333 PANTHER S12-LIKE, 30S RIBOSOMAL PROTEIN S12 SUBFAMILY PROTEIN 237 333 - -
Car03g00665 333 TIGRFAM rpsL_bact: ribosomal protein uS12 229 333 IPR005679 GO:0003735|GO:0006412|GO:0015935
Car03g00665 333 ProSitePatterns Ribosomal protein S12 signature. 253 260 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g00665 333 Pfam Ribosomal protein S7p/S5e 1 80 IPR023798 -
Car03g00665 333 PRINTS Ribosomal protein S12 signature 320 332 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g00665 333 PRINTS Ribosomal protein S12 signature 287 304 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g00665 333 PRINTS Ribosomal protein S12 signature 252 267 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g00665 333 PRINTS Ribosomal protein S12 signature 304 320 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g00665 333 PRINTS Ribosomal protein S12 signature 268 287 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g00665 333 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 237 333 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g00665 333 MobiDBLite consensus disorder prediction 208 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00665 Car-Chr3 34329045 34331046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00665 250 309 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 44.118 6.20e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00665 K02950 - egt:105951191 188.734