Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00648 ATGTCATCTTCAAGCTACACAAATTCACCCTGTGCTGCTTGCAAGTTTTTAAGAAGAAAATGCATGCCAGATTGCATTTTTGCTCCATATTTTCCACCAGAAGAACCACAGAAGTTTGCAAACGTTCACAAGATATTTGGTGCAAGCAATGTGAGCAAACTTCTGAATGAAGTTCAACCAAATCAAAGGGAAGATGCTGTGAACTCTCTTGCTTATGAAGCTGAGGCTAGAATAAAAGATCCAGTTTATGGTTGTGTTGGTGCTATTTCAGTCCTCCAAAGACAAGTTATTAGGCTCCAAAAGGAACTTGATGCAACAAATGCTGATTTGATTCGATATACTTGTACTGATATTACAAACCAAGATAGTAGAAGGATCGGTGAAGAGGGAGGTTCTTCTCTTGGTCAATCTCCTCATGAAGGTTTTTATTATCCTTCAACTCCTTGGAACAATGATCCACTTGGAGATGGTTATCACACAGGAGGTGATAATACTATGTGA 501 0.3892 MSSSSYTNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPNQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCTDITNQDSRRIGEEGGSSLGQSPHEGFYYPSTPWNNDPLGDGYHTGGDNTM 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00648 166 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Car03g00648 166 Coils Coil 89 109 - -
Car03g00648 166 MobiDBLite consensus disorder prediction 122 166 - -
Car03g00648 166 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Car03g00648 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 129 - -
Car03g00648 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00648 Car-Chr3 33761566 33763374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00648 4 114 AS2 family AT3G27650 84.685 2.23e-69 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car03g00648 LOB 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00648 - - var:108328620 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00648 03 33761566 33763374 Car03g00648 03 33761566 33763374 ECH