Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00644 ATGATGGAGGAAGTTGTTCCTTTCTTTCGGCCTGTAAGGTTGCCACAATCAGCTACGACAGCAGAGGACTGCGTGGTCGAGATGGCTAAATCGGTGAAGGAACAACTGGGGAGATGCATTAATAGTGGTGTTTTGATGAGAGATGCAGATGGTAGGTCAAAGTGCTTTGGTTTTGTCAATTTCGAAAATCCAGACAATGCTGCTAATGTTGTGGAAGCATTGAATGGGTGTCTTGATTCTGATTCTAAGAATAGTGGGTATCCTATTCTGGGAATAGTGGTCGCACAGATTGTGGTGTCCTTGGGAAGTGGACCGTGGGATCAGATTTTTGATGGAGGAAACTGTTGCAGCCCTTATGAGTGGGCTCTTAACTGA 375 0.4533 MMEEVVPFFRPVRLPQSATTAEDCVVEMAKSVKEQLGRCINSGVLMRDADGRSKCFGFVNFENPDNAANVVEALNGCLDSDSKNSGYPILGIVVAQIVVSLGSGPWDQIFDGGNCCSPYEWALN 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00644 124 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 76 IPR000504 GO:0003723
Car03g00644 124 SUPERFAMILY RNA-binding domain, RBD 40 77 IPR035979 GO:0003676
Car03g00644 124 PANTHER POLYADENYLATE-BINDING PROTEIN 22 78 - -
Car03g00644 124 Gene3D - 12 83 IPR012677 -
Car03g00644 124 PANTHER RNA BINDING PROTEIN 22 78 - -
Car03g00644 124 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 76 IPR000504 GO:0003723
Car03g00644 124 Pfam Reversibly glycosylated polypeptide 1 39 IPR037595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00644 Car-Chr3 33415252 33415626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00644 39 76 Eukaryotic Initiation Factors Gene Family AT2G23350 71.053 1.72e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00644 K13126 K13379 han:110886321 68.9366