Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00621 ATGAAAGTTTTGGTTTTTTTTCTTTGGCTTTTTGCATCTTCATTAGGTAAAAACCTCTTAACATGTGAAACATCACCACATGCTTCTAGCTTTTACCATTGCAATGAAAATGTGTCCCAAAATCATTGTGAAACATTTGCACTATTTTTCACAAACTCTCACTACTCATCACTTTCAAACCTTACCTTATACTTAGGACTCAACAAATTTGTCATAGCAAAAACCAATGGTTTTTCGGAAGAAACTGAGCTCTTTCCATTGAATCACCCTCTTCTGATACCAATTGATTGCAAATGCACAAGTGGTTTTTTTCAAGGTGAATTGATCAAAACTACCATCAAAGGTGAGAGCTTTTATGAAATTTCTCAATCATTAGAAGGCTTAACATCTTGCAAAGCTATTAAAGACAACAACTTTGGTGTTTTGTCACCTTGGAACCTTGATGGTAATCTCAAATTGGTTATTCCATTGAAATGTGCTTGCCCTTTTGCTTCTTCTCCTTTTGTTACACCAAAACCAAAATACTTTCTGTCTTATCCTATAATTGAAGGTGACACAATTTCAAATTTGGCCTTAAAGTTCAATATTACAAAAGAAGCTATAGTTTCTTCAAATAACTTATCATCATCAAAAGTATTAGAACCTTTTACAACTATTCTAATTCCATTGAATAATAACAACCCTTTCCTTGATTTTCAAGCTAAACCAAAACAACCCAATTCATATTTTCCAACCAACAACATCACAATTACAAAAAGTCAACACAAGAAGTCAAAAATGAGAACGAGTGAATTTTATATTGGTCTAATTGGTGTTGCAATCGGAGCTTTCTTTGCTTTAGTAGTAACCTTTTTGTACATGAGGCTGTTGAAGCAAAAGAAAGTGGAAGAAAATTCATGCAAAGAAAGAAATATGGAGCTACAACATCTAAATCAAAGTGTGAGAACCACAAGTGATAAGAAAGCTTCATTTGAAGGGTCACAAGATACTCTTGATGGTAAAATCAATGATTCAAAACCACATAAGGTTTTGCTGGAGACATATACTATTGAAGATTTGAGAAAAGTAACTGAAGATTTCAGTTCAAATTTTCATATTGAAGGGTCAGTTTTTCATGGTTGTTTAAATGGGAAGAACATAGCAATCAAAAAAATGAAAAATGAGATTTTGTCAAAATTTGATCTTGAATTTTTCCATGATGCAATTCAAGATCATCCAAACATAATTAAGCTTCTTGGTACATGTATTTCAAAAGGGTCATCATCAGATTCATTTTTGGTTTTCGAGTATGCGAAAAACGGTTCTTTGAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAACCAATTCATTTCTTCATGCTATTGTTTCTTGAATTGGAACCAAAGGCTTAAAATTTGTCTTGATGTTGCAAGTGCATTGGATTACATGCACCATGTTATGAATCCAAGTTATGTTCATTTCAATGTGAAGAGTAGAAACATTTTTTTGGATGAAGAATTTGGTGCTAAGATAGGTAAATTTGGTATGTCAAATTGTGTTGAGAATGAAACTAAGGATCCTAAATTTTATTCAACTAATCGTTCTTCATGGAGTCTTGGTTATTTAGCACCTGAATTTGTTCACCAAGGTATAGTTTCAACAAACATTGATATATATGCTTATGGTGTTGTTTTATTAGAAGTTTTGTTTGGTCAAACACCTATAAGTGTTTCATCAAGTGATAATAAAGGGGAAGGAAGTGTTTGGCTTAGTGACAAAATAAAAGTTATTTTGAGGTCAGAAAATGTGAATGAATTAAGGGAGTGGATAGATAGTGCATTAGGGGAGAATTACTCAATTGATGAAGCTTTGATAGTGGCTAATATTGCAAAAGATTGTGTTGAGGAAGATTCTAGTTTGAGGCCTAGTGCAAGGGAGATTGTTGAGAAGCTATCAAGATTAGTGGAGGAATTGCCAAATGAGGAATGTCAAATTTTGATGAGCGAAAACTCTTGCAAACCTCTGGTGGAGGCACTAGGAAGTAATATGTCAATAACCCATTAG 2046 0.3338 MKVLVFFLWLFASSLGKNLLTCETSPHASSFYHCNENVSQNHCETFALFFTNSHYSSLSNLTLYLGLNKFVIAKTNGFSEETELFPLNHPLLIPIDCKCTSGFFQGELIKTTIKGESFYEISQSLEGLTSCKAIKDNNFGVLSPWNLDGNLKLVIPLKCACPFASSPFVTPKPKYFLSYPIIEGDTISNLALKFNITKEAIVSSNNLSSSKVLEPFTTILIPLNNNNPFLDFQAKPKQPNSYFPTNNITITKSQHKKSKMRTSEFYIGLIGVAIGAFFALVVTFLYMRLLKQKKVEENSCKERNMELQHLNQSVRTTSDKKASFEGSQDTLDGKINDSKPHKVLLETYTIEDLRKVTEDFSSNFHIEGSVFHGCLNGKNIAIKKMKNEILSKFDLEFFHDAIQDHPNIIKLLGTCISKGSSSDSFLVFEYAKNGSLKDWLHGGLAIKNQFISSCYCFLNWNQRLKICLDVASALDYMHHVMNPSYVHFNVKSRNIFLDEEFGAKIGKFGMSNCVENETKDPKFYSTNRSSWSLGYLAPEFVHQGIVSTNIDIYAYGVVLLEVLFGQTPISVSSSDNKGEGSVWLSDKIKVILRSENVNELREWIDSALGENYSIDEALIVANIAKDCVEEDSSLRPSAREIVEKLSRLVEELPNEECQILMSENSCKPLVEALGSNMSITH 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00621 681 ProSiteProfiles Protein kinase domain profile. 350 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00621 681 Gene3D Transferase(Phosphotransferase) domain 1 431 666 - -
Car03g00621 681 Gene3D Phosphorylase Kinase; domain 1 332 430 - -
Car03g00621 681 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 3 673 - -
Car03g00621 681 Gene3D LysM domain 168 228 IPR036779 -
Car03g00621 681 CDD LysM 183 221 IPR018392 -
Car03g00621 681 MobiDBLite consensus disorder prediction 308 331 - -
Car03g00621 681 SUPERFAMILY Protein kinase-like (PK-like) 352 645 IPR011009 -
Car03g00621 681 SMART LysM_2 178 222 IPR018392 -
Car03g00621 681 Pfam LysM domain 182 222 IPR018392 -
Car03g00621 681 PANTHER PROTEIN LYK2 3 673 - -
Car03g00621 681 ProSiteProfiles LysM domain profile. 177 221 IPR018392 -
Car03g00621 681 Pfam Protein kinase domain 368 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00621 681 SUPERFAMILY LysM domain 178 222 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00621 Car-Chr3 31184035 31186083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00621 23 671 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 38.872 4.22e-139 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Car03g00621 Pkinase 3.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00621 - - gmx:100816082 908.672