Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00606 ATGGAGATAAGAAATGTAAAGAAAATGCCAGGATCTAGTTGGATAAGAAAATGTCTCAAAGGTGTACGCTGGCCTGGGAATTTGGACAGAGATCCAAAGGGCTGGAACATGCCTCCTAAACAAAACCAATTGAAAATTGCAATCAGAAGCAGAACCTCATTTTCCAAGTTTGTCAAGGTTCTGATCTTCAGTCAGTGGACTAGAGTGTTGGATATAATGGATTATTATTTCAGTGAAAAAGGCTTCGAAGTTTGCAGGATTGATGGTTCAGTGAAACTGGAGGATAGGAAACGACATATCCAGGACTTCAATGATACAAACAGCAATTGCCGAATCTTCCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGATTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGCATGTTCATGTTTACAGGCTCGCAACTGCTCAATCAGTAGAGGGTCGAATGTTAAAAAGATCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAAGAGCGTACAAAGCCTGCCATTGTGGATGAGATGGAGGTTTGTATGGTAGCAGTAGCATGCTAA 654 0.4128 MEIRNVKKMPGSSWIRKCLKGVRWPGNLDRDPKGWNMPPKQNQLKIAIRSRTSFSKFVKVLIFSQWTRVLDIMDYYFSEKGFEVCRIDGSVKLEDRKRHIQDFNDTNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKHVHVYRLATAQSVEGRMLKRSFSKLKLEHVVIEKGQFHQERTKPAIVDEMEVCMVAVAC 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00606 217 CDD SF2_C_SNF 59 165 - -
Car03g00606 217 Pfam Helicase conserved C-terminal domain 58 155 IPR001650 -
Car03g00606 217 PANTHER SNF2/RAD54 HELICASE FAMILY 54 204 - -
Car03g00606 217 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 40 196 IPR001650 -
Car03g00606 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 200 IPR027417 -
Car03g00606 217 PANTHER BNAC07G16550D PROTEIN 54 204 - -
Car03g00606 217 Gene3D - 46 214 IPR027417 -
Car03g00606 217 SMART helicmild6 71 155 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00606 Car-Chr3 30244320 30246135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00606 33 175 RAD5 or RAD16-like Gene Family AT5G43530 37.762 1.67e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00606 K19001 - gmx:100817842 288.5