Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00587 ATGGATTGGGATTGGAAAGAATTTGTTTGGGATCCATCTGGGTTAGAGATAGGTAATAGTGATTTAGAAGAGAGGAAAACTGAAGGAACTTTAGTTGATTTGAGGCTTGGTGCTGAAGCTTCTGATTCAAGGGAAAAATCAGTTCAAGATACATCAAAAGAAGACTCGAAAGCCGTGTCATCGCCTTCTGGATCATCGAAAAGATTGCGGTTGCAAAACGGATTGCAGAATATGATTTGCTCGGTCGATGGATGCAAAGCAGATCTTAGTGATTGTAGAGAGTATCATAAGAGGCATAGGGTGTGTGAAAAGCACTCTAAGGCTCCTGTTGTGTTGGTTGGAGGCAAGCAGCAGAGATTTTGTCAACAATGCAGCAGGTTTCATTCACTTGGAGAGTTTGATGAGGTTAAGAGGAGTTGCCGGAAAAGACTTGATGGACATAATAGGCGTCGGAGGAAACCTCAGCCGCCTTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGTCCTAGAATCCTACACTTTGGTAGCCCTCAAACATATGTGAATCCTATAATGAGAAACATTTGGCCTGCCACTGCCATAACCGAAGCTGAATCTGGTTACGATCATCACCGACTTTTGTACAGAATTGACAAAAGTCGAAAAGATAAGGGACATCCTTTTCGTCAAGAAATCGTCCCTAAACCAGGCAACGGTAACGAATCAGTGCCTGAAACTCCTATCTATCATCCAATTCGCAGTGCGCCTGTTGCCACATCAGCATGCGGAAAAGGCGGTAGTAGGAAGCTCTCTTCTGATAGCAAACCCGGATCTTTCGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAAACACAAAGTTCAGAGTTAAGTTTGATGCAGTCAAGCATCAACAGTCCAACACAATCTTCATCTGGAGGGATGAACTTCGATGCCGTGAACGAGTACTCATACTCGGGAAAGGCGAAAGATAAGACAAATGGTTCGGTTTTCGTTCTTGATGCAAACACAACAAACCTTCATTGCAATGGGATGCTGCAAATGGGGCAAAATGGTTTGGTGGAAAATGAAAACTCACTCACACTTCCATTTTTTTGGGAGTAA 1119 0.4316 MDWDWKEFVWDPSGLEIGNSDLEERKTEGTLVDLRLGAEASDSREKSVQDTSKEDSKAVSSPSGSSKRLRLQNGLQNMICSVDGCKADLSDCREYHKRHRVCEKHSKAPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPQTYVNPIMRNIWPATAITEAESGYDHHRLLYRIDKSRKDKGHPFRQEIVPKPGNGNESVPETPIYHPIRSAPVATSACGKGGSRKLSSDSKPGSFDSGCALYLLSTLQTQSSELSLMQSSINSPTQSSSGGMNFDAVNEYSYSGKAKDKTNGSVFVLDANTTNLHCNGMLQMGQNGLVENENSLTLPFFWE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00587 372 Pfam SBP domain 80 153 IPR004333 GO:0003677
Car03g00587 372 ProSiteProfiles Zinc finger SBP-type profile. 77 154 IPR004333 GO:0003677
Car03g00587 372 SUPERFAMILY SBT domain 78 159 IPR036893 GO:0003677|GO:0005634
Car03g00587 372 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 14 372 - -
Car03g00587 372 MobiDBLite consensus disorder prediction 33 68 - -
Car03g00587 372 MobiDBLite consensus disorder prediction 33 53 - -
Car03g00587 372 MobiDBLite consensus disorder prediction 222 242 - -
Car03g00587 372 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 372 IPR044817 GO:0003677
Car03g00587 372 Gene3D - 71 141 IPR036893 GO:0003677|GO:0005634
Car03g00587 372 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00587 Car-Chr3 27861177 27864646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00587 33 205 SBP-box Gene Family AT5G50670 47.368 3.40e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car03g00587 SBP 4.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00587 - - lja:Lj1g3v3847150.1 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00587 03 27861177 27864646 Car03g00587 03 27861177 27864646 ECH