Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00535 atggaagaagaatttgaaagagaagaagaagaagaaatagacccagaaaGCAGTAATTCATTAAATCAACCATTGATCAAAAGAAACAGAACACTATCTTCAAATCCACTTGCTCTTGTTGGTGAAAAAGTTTCCTACATAGAAAGCTTAGACTATGAGATAAATGAGAATGATCTATTCAAGCATGGTTGGAGAAGCAGATCAAGAATTGAAGTATTACAATACATATTCTTGAAATGGTTACTTGCATTTCTTGTTGGATTTTTAACTGGTCTTATAGCTACTCTTATAAATCTTGCTGTTGAAAACATTGCTGGATACAAGCTTTTAGCTGTTCTTAAATATATTCAAAGAGAAAGGTACTTGACAGGTTTCTTATTCTTCACGGGGATTAATTTCATTTTAACATTTGTTGCTGCTATTCTCTGTGTGTGTTTTGCACCCACAGCAGCTGGACCTGGAATACCTGAAATCAAAGCTTATCTTAATGGCGTTGATACACCAAACATGTTTGGGGCTACGACATTGATAGTTAAGATAATTGGAAGCATTGGAGCTGTTGCTGCAGGCCTAGACCTTGGGAAAGAAGGACCCTTAGTACATATAGGCAGCTGCATTGCTTCCTTACTAGGCCAAGGAGGCCCCGACAATTACAGAATCAAATGGCGCTGGCTACGATATTTCAACAATGACCGTGACCGTCGGGATCTTATTACCTGTGGTGCATCTTCAGGAGTTTGTGCGGCTTTTAGGGCCCCTGTTGGGGGAGTTCTCTTTGCGCTTGAAGAGGTTGCAACCTGGTGGAGAAGCGCTCTTCTATGGAGAACTTTTTTTTGCACAGCCGTGGTGGTGGTGGTGCTCAGGACCTTTATCGAAATCTGTAACTCGGGGAAATGTGGCCTTTTCGGTACAGGTGGACTAGTCATGTTTGATGTTAGCAATGTCACTGTTAGATACCATGTGATGGATATTCTGCCTGTTGCAGTCATTGGAATCATTGGCGGGGTATTGGGAAGCCTTTACAATCATCTTTTGCATAAGGTCCTCAGACTTTACAATCTCATCAATCAGAAAGGAAAAATACATAAACTCCTCCTCAGTCTTGCAGTAGTACTCTTCACGTCAGCATGTCAATATGGTCTCCCGTTCTTAGCAAAATGCACCCCCTGTGATTCCTCATTTCCAGAGTCTGACGCTTTCTGCCCCACAAATGGAAGGTCTGGAAATTTCAAACAATTCAATTGTCCACCTGGCCACTACAATGATCTTGCTACTCTGCTGCTTACCACTAATGACGATGCTGTTCGAAACATATTCTCGACTAACACTCCTCATGAATATCAACCCTTCTCCCTCCTAATTTTCTTTGCACTATATTGCATATTAGGAGTAATTACTTTTGGAATTGCAGTCCCATCTGGGCTTTTCCTCCCAATCATTCTTATGGGATCGGCTTATGGCCGCCTTCTTGGCATGCTCATGGGACCTCATACAAACATTGATCAAGGGTTGTTCGCTGTACTTGGAGCAGCCTCCCTCATGGCCGGTTCCATGAGGATGACTGTATCCCTTTGTGTGATCTTCCTTGAACTTACCAGCAATCTTCTCCTACTACCGATAACAATGATTGTTCTCTTGATAGCAAAAAGTGTTGGAGACTGCTTTAACCCAAGCATCTATGAGATTATACTGCATCTGAAAGGCCTTCCTTTCATGGGTGCAAATCCTGAGCCGTGGATGAGAAATCTGACTGTCGGTGAGCTTGTAGATGTAAAGCCAGCAGTGATTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTTGAAAAACACTACACATAACGGCTTCCCGGTGATGGATGATGGGATAATACCACCAGTACGACACGCCAATGGGGCAATGGAACTGCATGGACTAATACTAAGAGCACACCTCATCCAAGCATTAAAGAAAAAGTGGTTCTTGAAAGAGAGAAGAAGAACAGAGGAATGGGAAGCAAGAGAGAAATTTACCTGGGTAGAGCTGGCAGAGAGAGAAGGGAATATTGAAGAGGTGGCTATAACAAGGGAAGAAATGGAGATGTTTGTTGATTTACATCCTCTCACCAATACAACTCCGTTTACTGTTTTAGAGAGCATATCAGTGGCGAAAGCAATGATTCTCTTCCACCAAGTTGGACTTCGTCATCTGCTTGTAGTACCCAAATATCAGGCATCAGGGGACAGACCTAATCATGTGATCTCACAGGTATGCCCTGTAATTGGAATTTTGACCAGACAGGATCTACTGGCCCACAACATTCTGACAGTTTTTCCTCACCTGGCAAAATCTAAAAGAAGACAGAAGAGAAATTGA 2370 0.4093 MEEEFEREEEEEIDPESSNSLNQPLIKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHGWRSRSRIEVLQYIFLKWLLAFLVGFLTGLIATLINLAVENIAGYKLLAVLKYIQRERYLTGFLFFTGINFILTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFCTAVVVVVLRTFIEICNSGKCGLFGTGGLVMFDVSNVTVRYHVMDILPVAVIGIIGGVLGSLYNHLLHKVLRLYNLINQKGKIHKLLLSLAVVLFTSACQYGLPFLAKCTPCDSSFPESDAFCPTNGRSGNFKQFNCPPGHYNDLATLLLTTNDDAVRNIFSTNTPHEYQPFSLLIFFALYCILGVITFGIAVPSGLFLPIILMGSAYGRLLGMLMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTSNLLLLPITMIVLLIAKSVGDCFNPSIYEIILHLKGLPFMGANPEPWMRNLTVGELVDVKPAVISXXXXXXXXXXXXXXLLKNTTHNGFPVMDDGIIPPVRHANGAMELHGLILRAHLIQALKKKWFLKERRRTEEWEAREKFTWVELAEREGNIEEVAITREEMEMFVDLHPLTNTTPFTVLESISVAKAMILFHQVGLRHLLVVPKYQASGDRPNHVISQVCPVIGILTRQDLLAHNILTVFPHLAKSKRRQKRN 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00535 789 PRINTS Chloride channel signature 179 198 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car03g00535 789 PRINTS Chloride channel signature 503 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car03g00535 789 PRINTS Chloride channel signature 521 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car03g00535 789 PRINTS Chloride channel signature 148 165 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car03g00535 789 PRINTS Chloride channel signature 559 573 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car03g00535 789 PRINTS Chloride channel signature 243 262 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car03g00535 789 PRINTS Chloride channel signature 471 491 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car03g00535 789 Pfam Voltage gated chloride channel 136 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car03g00535 789 CDD ClC_6_like 48 572 - -
Car03g00535 789 CDD CBS_pair_voltage-gated_CLC_euk_bac 612 770 - -
Car03g00535 789 PRINTS Plant CLC chloride channel signature 296 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car03g00535 789 PRINTS Plant CLC chloride channel signature 278 288 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car03g00535 789 PRINTS Plant CLC chloride channel signature 264 272 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car03g00535 789 PRINTS Plant CLC chloride channel signature 423 439 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car03g00535 789 PRINTS Plant CLC chloride channel signature 53 61 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car03g00535 789 MobiDBLite consensus disorder prediction 1 16 - -
Car03g00535 789 SUPERFAMILY CBS-domain pair 577 769 IPR046342 -
Car03g00535 789 MobiDBLite consensus disorder prediction 1 22 - -
Car03g00535 789 Gene3D Clc chloride channel 71 573 - -
Car03g00535 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 8 784 - -
Car03g00535 789 PANTHER CHLORIDE CHANNEL PROTEIN 8 784 - -
Car03g00535 789 SUPERFAMILY Clc chloride channel 57 573 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00535 Car-Chr3 23400117 23405058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00535 14 783 Ion Channels AT3G27170 77.532 0.0 1204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00535 K05016 - gmx:100788620 1343.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00535 03 23400117 23405058 Car03g00535 03 23400117 23405058 ECH