Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00518 ATGATCAATTCACTTTGTGGAAGCTCATTATCTCTTAAGAATGAGAATTCAAGAAACAAACTTCAACAAAATTCTTTAAACGACAACAAGAAAAATGCCACACAAACACAACCTTGTGATGATTTAGACCAAATTACTATTCTAACCCCACAAAGCTTAAACCTTCCATCACTCAAATTTGATTTAGATGGTGATGTTGAAATTCAATCACCAGATAGTTCAATGTGGGAATCATTTTTCTCTGACCAATTAGATGGTGATTTCATGATTTCTTCACCAATTAGAAATAATTTTCCTAATTCTCCCCAAGCTTCTAACTACAATTGtaataataataataataataaCTATGCTCAAATTGGAGCATTAAACAATACTAGTAACCAAAAAATGAAAGGACTTAGTCCATTACATAGAGTTTTTAATTCACCAAATAATCAATATATGCAACACGTTGAGAATCTTTCACTTCCAGCAATTGAAGAGTTTTTAGAAGATTATCAAGGATATTCATCAACAACAACAACAAAGGTTTCATCTTCTGAATGTTATGACATGGAAACTCCTATTTCAACAATTTTGGATAGTTTAACTATGCAAAATTCTTCAAGTTATAATTGTGGTAATTCATCATCTCAATTGACACAAGAGAGTGACCATGATATTTATCAACAAATGGGATCTATGGCTAGTGCTTCACTCTCACAAGCTTTGCAACAAGAAAGGTACCAAGAGAAACACCAAAAGTTGCAAGCTcaacaacaacttcaacaacaacagcaacaaAGTTTAACTGTGCCTATTCCAATTGGAAGTGAACAGGAGCAAGATAGTGGACTTCAACTGGTACACTTGCTTCTAGCTTGTGCTGAAGCAGTGGCCAAAGAGGAATACATGCTAGCAAGAAGGTATCTTCACCAACTCAACAGAGTAGTAACACCATTAGGTGATTCCATGCAACGTGTAGCTTCATGTTTCACTGAATCTCTAAGTGCAAGACTTGCTGCAACCctaacaactaagtcatcatcaacaaacaataacaaaaaactaacaacaccatcttcctcatcatcacaatcatcttcatcatcatGTTTCTCTCCCTTCACATCAAACCCTATGGAAGTTCTAAAGATTTACCAAATTGTCTACCAAGCTTGTCCTTACATTAAATTTGCTCATTTTACGGCTAATCAAGCAATTTTCGAGGCATTTGAGGCTGAAGAGCGGGTCCACGTCATTGACCTCGATATTTTGCAAGGCTACCAATGGCCTGCATTTATGCAGGCATTGGCTGCACGGCCTGGCGGTGCTCCGTTTTTACGGATCACTGGCGTAGGGCCGTGCATTGAATCGGTTACAGAAACAGGACGATGCTTAACAGAGTTAGCTCATTCTCTTCGCATCCCTTTCGAATTCCATCCCGTTGGAGAACAACTTGAGAATTTAAAACCGCACATGTTTAACCGTCGTGTANNNNNNNNNNGGTTAACACAGTTAACCGCCTGCATCGTGTTCCCGGGAATCATCTCGGAAACCTATTGTCCATGA 1554 0.3501 MINSLCGSSLSLKNENSRNKLQQNSLNDNKKNATQTQPCDDLDQITILTPQSLNLPSLKFDLDGDVEIQSPDSSMWESFFSDQLDGDFMISSPIRNNFPNSPQASNYNCNNNNNNNYAQIGALNNTSNQKMKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYQGYSSTTTTKVSSSECYDMETPISTILDSLTMQNSSSYNCGNSSSQLTQESDHDIYQQMGSMASASLSQALQQERYQEKHQKLQAQQQLQQQQQQSLTVPIPIGSEQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHQLNRVVTPLGDSMQRVASCFTESLSARLAATLTTKSSSTNNNKKLTTPSSSSSQSSSSSCFSPFTSNPMEVLKIYQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPCIESVTETGRCLTELAHSLRIPFEFHPVGEQLENLKPHMFNRRVXXXXLTQLTACIVFPGIISETYCP 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00518 517 Coils Coil 240 260 - -
Car03g00518 517 Pfam GRAS domain family 282 490 IPR005202 -
Car03g00518 517 PANTHER GRAS FAMILY PROTEIN RAM1 17 493 - -
Car03g00518 517 ProSiteProfiles GRAS family profile. 273 517 IPR005202 -
Car03g00518 517 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 493 IPR005202 -
Car03g00518 517 MobiDBLite consensus disorder prediction 13 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00518 Car-Chr3 22372512 22375337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00518 270 492 GRAS Transcription Factor Family AT3G54220 39.462 1.05e-41 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Car03g00518 GRAS 2.6e-60 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00518 - - gmx:100805039 562.377