Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00507 ATGGTTTCAATCCCCAAATTTTGTAGATTTTTCTCTACAATAGAAACATATGGTGCATTGAGAAATTTTCATTCCGGGGGTTGTAGCAGGACTTTGAATAAAAATCCAAACTTGGCACCAAATGAGAAGCTATTTAGGGTAGGGCTTTTCTGGGACTTGGATAATAAACCACCGAATTCCATCGCACCTTATGTAGTTGCCACTAAGCTGAGAATAACTGCAGCTTCGTTTGGGGTTGTTCGACATATGGTGGCCTATGGCAATAGCCACACCTTTAGCAATGTCCCCAGAGTCGTTAGTGAGAGGAGGAAAGAGCGGCAACTGTTGTTCCGTTTGAAGAATAAGGGCGTCATTAAACCTAATGAGCCTTATCTTTGTCGCGTTTGTGGGAGAAAATTTTACACGAATGAAAAACTTGTTAACCATTTCAAGCAACTGCATGAGCGTGAGCACTTGAAAAGGGTGAACCAGATTGAGTCAGCTAGAGGGAGTAGGAAGGTAAAATTGGTGGGGAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTGTTTTGACTCCTAAAGTTGGGTATGGTTTGGCTGATGAGCTGAAAAGGGCAGGGTTTTGGGTTCAAACTGTCTTGGACAGCCCACAAGCTGCGGATATCGCGCTGAAAAATCATATTGTGGATATGATGGATCATAGGAGGGTTGAGTGTGTGGTCCTTATATCAGATGATTATGATTTTGTTGATGTGATAAAGGAAGCAAAGCTGCGATGTCTCAAGACGGTTGTTATCGGGGATGCTAGTAGTGATGGAGTGTTGAAAAGGACTGCCGATACTGCCTTTTCTTGGGAGGAAATTTTGATGGGGAAAGCTAAGAAGCAGACTGTATCGGTTGTGGAAAACTGGAAAGATCGCGATATATTAAAAAGGTTGGAGTGGACATACAACCCAAACGTGGATAAAAAGAAAGTCAACTTGGATGATACAGCTGCTGAAACATCtgaagatgatgatatcgaagatatctgtggtgatattgatgatgattacaaggatgaCAGAGGTTCTTGGTGGGAGTTAGACCCCAATGATAATGATGTTGCAAGTAGATAA 1110 0.4009 MVSIPKFCRFFSTIETYGALRNFHSGGCSRTLNKNPNLAPNEKLFRVGLFWDLDNKPPNSIAPYVVATKLRITAASFGVVRHMVAYGNSHTFSNVPRVVSERRKERQLLFRLKNKGVIKPNEPYLCRVCGRKFYTNEKLVNHFKQLHEREHLKRVNQIESARGSRKVKLVGKYSMKMEKYKKAASAVLTPKVGYGLADELKRAGFWVQTVLDSPQAADIALKNHIVDMMDHRRVECVVLISDDYDFVDVIKEAKLRCLKTVVIGDASSDGVLKRTADTAFSWEEILMGKAKKQTVSVVENWKDRDILKRLEWTYNPNVDKKKVNLDDTAAETSEDDDIEDICGDIDDDYKDDRGSWWELDPNDNDVASR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00507 369 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 29 367 - -
Car03g00507 369 CDD PIN_LabA-like 134 265 - -
Car03g00507 369 ProSitePatterns Zinc finger C2H2 type domain signature. 126 147 IPR013087 -
Car03g00507 369 Gene3D - 41 287 - -
Car03g00507 369 PANTHER - 29 367 - -
Car03g00507 369 SUPERFAMILY beta-beta-alpha zinc fingers 120 150 IPR036236 -
Car03g00507 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 152 IPR013087 -
Car03g00507 369 MobiDBLite consensus disorder prediction 329 369 - -
Car03g00507 369 MobiDBLite consensus disorder prediction 330 346 - -
Car03g00507 369 Pfam NYN domain 196 280 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00507 Car-Chr3 21396582 21397691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00507 29 369 C2H2 Transcription Factor Family AT4G12240 56.725 1.35e-133 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car03g00507 NYN 1.5e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00507 - - lja:Lj3g3v3326020.1 540.806