Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00457 ATGTTCACCGGCATCGACATGTCACTCGACGACATTATCAACAACTCCGCCATTCGCCACGGAAATCACAGCGGTCACGATCCGAACCGCCACTTCGGTTTCCGTTTTCCGGTCAGGAAAACACCGTACTCCATTTCTCAGTCTCAGGTTGCGAGAGAAGCGTTGCGAAGAAGTAGCTTCGATGTTCCAGAACTGGTTTTCGATCATTGCGATGTTCAGCCTCAGCTTCAGCCTCTCACCAAACTCTATATTTCTAACTTGGATCGTAGGGTTTCCAACGATGACATTCTGCTGTTGTTTTCAGAAGAGGGTGAGTTGGAAAGACATTCCATTCATTATGATCAGTTTGGGAGATCAAAAGGAACAGCAGAGGTTGTTTTTACAAAACAGTCTGATGCTTTAGCAGCTATCAAAAAATACAACAATATGAACCTTGATGGAAAGCCATTGCAAATTGAGCTTGTTGGAACAAGTTTGGTTACTCCTGCTGCTGCTATGCCTCTTGCTCAAAGTAGCTTACTGGGAAGCCCAAATGATTTATTTCTAAGGGAAGAAAAGCGGTTCGGAGGTAGCACGTACCATAATTACTTTACTCATCTCCATTTTCCAAGGAACGGTCGAGAACAGAAGAATCATATACGAAAGGTATCTTCTAGAGATATTGGCCATGGCTTTGAGAGTTATCACCAATGCCGCCGGGTAGAAGCAAAGTGCCATTTTAAGAAATTGTCTGTGAAAGATCTTGATGAAGACTTGGAGAAGTATCGATCAGAGGCTATGCAGATAAAGAGAAAATGGAAAGAGAAATCATGA 813 0.4317 MFTGIDMSLDDIINNSAIRHGNHSGHDPNRHFGFRFPVRKTPYSISQSQVAREALRRSSFDVPELVFDHCDVQPQLQPLTKLYISNLDRRVSNDDILLLFSEEGELERHSIHYDQFGRSKGTAEVVFTKQSDALAAIKKYNNMNLDGKPLQIELVGTSLVTPAAAMPLAQSSLLGSPNDLFLREEKRFGGSTYHNYFTHLHFPRNGREQKNHIRKVSSRDIGHGFESYHQCRRVEAKCHFKKLSVKDLDEDLEKYRSEAMQIKRKWKEKS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00457 270 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 6 258 - -
Car03g00457 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Car03g00457 270 SUPERFAMILY RNA-binding domain, RBD 71 155 IPR035979 GO:0003676
Car03g00457 270 Coils Coil 245 265 - -
Car03g00457 270 PANTHER THO COMPLEX SUBUNIT 4A 6 258 - -
Car03g00457 270 Gene3D - 75 156 IPR012677 -
Car03g00457 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 150 IPR000504 GO:0003723
Car03g00457 270 SMART rrm1_1 81 153 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00457 Car-Chr3 19621958 19624710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00457 82 155 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 2.77e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00457 K12881 - gmx:100785926 239.965