Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00454 ATGGAGAACCCGAATGATATGTGTGTTAGATGTTTGATAGACATCGTAGGTAATGTCGGAAAGCTCTGGTTAGATAATCATTGGCTTAGTGATTCTGTTCAAATTTTAAGGTCCATTTTGAGTCGATTGCCTTATAAGAAAGAAATGTGCCATCGCTGGCAAGTGAGAGGCTATTGCCCCTATGGCTCTGAGTGTATATTTGCGCATGGACCGCACGAGTTGAGGATGAGGATGGAGAATTAA 243 0.4198 MENPNDMCVRCLIDIVGNVGKLWLDNHWLSDSVQILRSILSRLPYKKEMCHRWQVRGYCPYGSECIFAHGPHELRMRMEN 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00454 80 SUPERFAMILY CCCH zinc finger 44 76 IPR036855 GO:0046872
Car03g00454 80 SMART c3hfinal6 44 71 IPR000571 GO:0046872
Car03g00454 80 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 71 IPR000571 GO:0046872
Car03g00454 80 ProSiteProfiles Zinc finger C3H1-type profile. 44 72 IPR000571 GO:0046872
Car03g00454 80 Gene3D - 41 77 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00454 46 75 C3H Transcription Factor Family AT1G68200 60.000 4.56e-08 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car03g00454 zf-CCCH 2.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00454 - - ptm:GSPATT00004875001 53.5286