Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00440 ATGAAGAGAGAAAGAGAAAGCATAACAATGGCAAATTGTTTGATGTTACTTTCTCGTGGAAGTAATCAATTTGAAGCCACATATTCATCAATCTCTTCAAACAATCGTGTGTTTGAATGCAAAACATGTAATAGGCAATTTTCTTCATTTCAAGCACTTGGTGGCCATAGGGCAAGTCATAAGAAACCAAGGTTGATGCAAGAAAATGGAGAAAATATTGATGGTCAATTGCTAAATACACCCCCAAAGCCTAAAACACATGAGTGTTCTATTTGTGGGTTAGAGTTTGCAATAGGACAAGCTTTAGGTGGCCACATGAGGAGACATAGAGCTTCAAATTTGAATGGAAACATGATACACAATTCTAATACTATGAGTTGTAGTAGTGGTAGTCTTGATTCTTCACAAAAGATGAAAGTTGTTGGTAACAAGAGAGTTTTTGTTTTGGATTTGAATTTGACTCCCTTTGAGAATGATTTGGAGTTTTTTAAGATAGGAAAGACAACTCCTAATTTGGTTGATTATTTGCATTGA 534 0.3502 MKRERESITMANCLMLLSRGSNQFEATYSSISSNNRVFECKTCNRQFSSFQALGGHRASHKKPRLMQENGENIDGQLLNTPPKPKTHECSICGLEFAIGQALGGHMRRHRASNLNGNMIHNSNTMSCSSGSLDSSQKMKVVGNKRVFVLDLNLTPFENDLEFFKIGKTTPNLVDYLH 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00440 177 SMART c2h2final6 87 109 IPR013087 -
Car03g00440 177 SMART c2h2final6 38 60 IPR013087 -
Car03g00440 177 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Car03g00440 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Car03g00440 177 Gene3D Classic Zinc Finger 18 113 - -
Car03g00440 177 PANTHER ZINC FINGER PROTEIN ZAT12 9 162 - -
Car03g00440 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Car03g00440 177 Pfam C2H2-type zinc finger 37 63 - -
Car03g00440 177 Pfam C2H2-type zinc finger 87 111 - -
Car03g00440 177 PANTHER ZINC FINGER PROTEIN ZAT5 9 162 - -
Car03g00440 177 SUPERFAMILY beta-beta-alpha zinc fingers 36 109 IPR036236 -
Car03g00440 177 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00440 Car-Chr3 19191144 19191931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00440 1 174 C2H2 Transcription Factor Family AT2G37430 45.405 3.79e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car03g00440 zf-C2H2_6 7.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00440 - - gmx:100500371 261.151