Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00435 ATGACCACCCATCTTCTACCTCCTATCTCCAAACCCTTTTTTCGGCCGCTGCACCCCAAGGAGCTTTTAAGAAGTGCGGGTTTTAGGGTTTTCAATGGCTCCTACAAAGGGGGACATTACCAAAAAGAGCCAAAGACATTGACAAAGGAAAGGAACCCTAAGTATCCTCGCATTAGTGCGACACCAAGAAACAAGTTGGACCATTACCAAATTCTTAAATTTCCTCTAACTACTGAGTCTGCGATGAAGAAAATCGAAGATAACAATACCTTAGTTTTTATTGTTGACCTACGTGCTGACAAAAAGAAAATTAAAGATGCTGTGAAGAAAATGTATGACATTCAGGCAAAGAAAGTAAACACTTTGATCAGGCCTGATGGTACCAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGCATTGGATGTTGCCAACAAAATTGGACTCCTTTCTAATCCTTATTATGAAGAACCAGACATAAGCAGGTGTTCCTTCTGTCGTCGCAACTTTGGTAGGGACCGCTACATGTCTGGGACATAA 543 0.4125 MTTHLLPPISKPFFRPLHPKELLRSAGFRVFNGSYKGGHYQKEPKTLTKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGLLSNPYYEEPDISRCSFCRRNFGRDRYMSGT 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00435 180 Pfam Ribosomal protein L23 71 133 IPR013025 GO:0003735|GO:0005840|GO:0006412
Car03g00435 180 PANTHER 60S RIBOSOMAL PROTEIN L23A 43 150 IPR013025 GO:0003735|GO:0005840|GO:0006412
Car03g00435 180 TIGRFAM uL23_arch: ribosomal protein uL23 75 151 IPR019985 GO:0003735|GO:0005840|GO:0006412
Car03g00435 180 Hamap 50S ribosomal protein L23 [rplW]. 71 151 IPR013025 GO:0003735|GO:0005840|GO:0006412
Car03g00435 180 Gene3D - 38 151 IPR012677 -
Car03g00435 180 ProSitePatterns Ribosomal protein L23 signature. 129 144 IPR001014 -
Car03g00435 180 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 43 150 - -
Car03g00435 180 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 68 144 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00435 Car-Chr3 18903802 18908383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00435 44 151 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 91.667 4.11e-59 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00435 K02893 - bvg:104886956 205.297