Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00420 ATGCCAAATCCATCTTGTAATGGAGCAACCATGGAGGAATTGGAAGAGAAAAGAAGAGCCCAAGTAGTAGCAAAGCTTCATGCAATTCTTAGGCCATTTCTTTTGCGTAGAATGAAGTCTGATGTTGAGCTAATGTTGCCACGGAAAAAAGAGATCATTGTATATGCTAACATGACTGAGCATCAGAAGAGCTTGCAGGAACATTTAATTAATGAGACACTAGGGAAATATTTGAATGACAAACTTTCAATTGGACGCTCTGTGACAAAGCTCAATAATTTGGTTCTTCAACTTAGGAAAGTCTGTAACCATCCTGACCTCCTAGAATCGGCTTTTGATCGTTCATATTTTTATCCTCCTGTGAATGAGATCATTGAACAATGTGGAAAATTCCATTTGCTCAACCGATTGTTGGAACGACTATTTGCACGAAATCACAAAGTTCTGATCTTCAGTCAGTGGACTAGAGTGTTGGATATAATGGATTATTATTTCAGTGAAAAAGGCTTCGAAGTTTGCAGGATTGATGGTTCAGTGAAACTGGAGGATAGGAAACGGCAGAACCAGGACTTCAATGATACAAACAGCAATTGCCGAATCTTCCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGATTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGCATGTTCATGTTTACAGGCTCGCAACTGCTCAATCAGTAGAGGGTCGAATGTTAAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAAGAGCGTACAAAGCCTGCCATTGTGGATGAGATGGAGGTTTATGTCATAGGCTTGGCTGAAATTTTTAGGCTTGGCTCATTTAAAGATGAAGCAAAAGAGATTGTTGAGATGTCAACAGTGGAAGCCTATCGCATGGCTATGAAAAGTGTGGTTAGATGGGTGAGAATGAACATGAAACCTAACAAGACTAGAGTCTTCTTCACTAGCATGTCACATTCTCATGGAAGGCAAGTTTAG 1092 0.4029 MPNPSCNGATMEELEEKRRAQVVAKLHAILRPFLLRRMKSDVELMLPRKKEIIVYANMTEHQKSLQEHLINETLGKYLNDKLSIGRSVTKLNNLVLQLRKVCNHPDLLESAFDRSYFYPPVNEIIEQCGKFHLLNRLLERLFARNHKVLIFSQWTRVLDIMDYYFSEKGFEVCRIDGSVKLEDRKRQNQDFNDTNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKHVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTKPAIVDEMEVYVIGLAEIFRLGSFKDEAKEIVEMSTVEAYRMAMKSVVRWVRMNMKPNKTRVFFTSMSHSHGRQV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00420 363 Pfam Helicase conserved C-terminal domain 134 243 IPR001650 -
Car03g00420 363 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 7 299 - -
Car03g00420 363 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 312 361 IPR026057 GO:0016740
Car03g00420 363 Pfam SNF2-related domain 17 108 IPR000330 GO:0005524|GO:0140658
Car03g00420 363 PANTHER SNF2/RAD54 HELICASE FAMILY 7 299 - -
Car03g00420 363 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 133 289 IPR001650 -
Car03g00420 363 CDD SF2_C_SNF 119 253 - -
Car03g00420 363 SMART helicmild6 159 243 IPR001650 -
Car03g00420 363 Gene3D - 43 341 IPR027417 -
Car03g00420 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 289 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00420 Car-Chr3 18372549 18374878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00420 99 263 RAD5 or RAD16-like Gene Family AT5G43530 35.928 1.43e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car03g00420 Helicase_C 2.3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00420 K19001 - gmx:100777687 514.612