Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00379 ATGGCATTCCCTCCACAAATCGAAGAAAACGGTGGAGGAGGAGGTGCAGTAGAAGAAGACACCACAATTGATATTCACACCACCCTCGGTGCTCCCATTCGTTACCTTCCTCTCGATCATCTCTACTCCTCCACGTCACCTTGTAGTGGTTCTTCCAACGTCATGTCTAAAAAAGTTAAAGCTCGCAAACTcaacaacaacagcagcagcatcaacgacaataataataataatcataaCGGTGAAGAAATTGATTCACCGATTGATAATAAAAAAACGACGTCGTCGTCTATGGTGGTTTATCCTAAACCTAAACCTAAACCACCTATTCTGTTTGTTTACTCTCGTCGGAGAAAGAGAAGTTTGTTTAAAACGACGCCGTTTTGTAATGAGTTGCAAAATTGTGAGAGGACGGTGTTGAAGAGGAGGAAAATTGGGAGTACTGAGTTGGAGAGATTAGGGGTTGATTGGAATGCGTTGGGGAAATTTGATGGACCTAGATTGAGGGAATGTCGTAATCAAATTGGGAATTCCGGTTTTGATGGAAGTAACAACAGTAACAAGTGTGGTTCTGTTGTCAAGATTCACAAGTTGTTTCCTGATTCTCGTGCTTTGAAGAGATGGGTCATGTTGAATTTTGATGAAGCTGATCCCGAGGCTTTTATTGGATTGAAATGCAAGGTTTACTGGCCCATGGATTTAAGATCATACACTGGCTGTGTCAAAGGTTACGATAGGGAAACTAAGCTACACCATATCGAGTATGATGATGGAGACGAGGAAGACTTAACTCTTTCAAATGAAAATGTAAAATATCATGTTTCTCGTAACGACATGGAACATTTAAAATTGAGTTATGCCAAAGTTCGTGACAACAGCGTCTCTGATTATGATGTTGAAGAGATGCTTGCACTGGCTGCAAGTATGAACGATTGTCAAGATTATGAGCCCGGGGATATCATATGGGCCAAGCTTACAGGTTATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTAGTAACTGTAAGGGTTTAAAAACACTACTAGGGGGAAGATCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGAGTTAGAGTGCAACAGGTAAAATCATTTCTCAGTGGACTTCTATCAGATCTACACTCGAAGTGCAAGAAACAGAGTTTTTTTGAAGGTTTAGACGAGGCAAAAAGGTATTTAAGTGCACAGAAGCTTCCTTTGGAGATGCTAGAATTGCAGAAAAGATGTACAGCCGAGGACTCTAAAAATGTAAGTGGAGAGGATGGAGGATGTACAGATTCGGGTGAAGACCATTCAAATGAAGGGACTTTAGCAGCACTTCAAAGCATCGATACTTGTCCTTATGAAGTAGGAGATTTGCAAATTCTAAGCCTTGGAAAGAAAGTTGGAGACTCTGCATCTTTTGGGGATGGAAGATCCATCTGGCCTGAAGGGTACACTGCAGTGAGGAAGTTCACTTCAGTTACTGACTCTACAGTATCTGTCCCTTATAAGATGGAGGTTTTGAGAGATCCAGAATGCAGATTCAGACCACTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCGATGGTCATACACCGTCTACTTGCTGGAATCAAGTATATGAAAGGATAAGGAAATTGGAAAAGGTTGTTTCTGAAGGTTCTGTTGCTGATGGTGTGGTAGAAAGTGGCTATGAATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAAGTGGCTAAACTTATAAAGGGATTATCTAAATCCAAAGTCTCTTCGAAGAACTCTGTTTGCAAGTTAGGTTCTGGTTATAGACAGGTTCATATTAATTGGTTTGATCTTGATAAGTGCAATGTGTGCCATATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGCGACAAATGCCGAATGATGGTTCATGCTAGATGCTATGGAGAACTGGAACCTGTTAATGGAAAGCTATGGTTATGCAACTTATGTCGTTCGGGTGCTCCTCCCCCACCTTGTTGCTTATGTCCACTCATAGGTGGTGCAATGAAACCGACAACGGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATTAGTAGGGATCGTTGGAGGTTGTTATGCAGCATATGTGGTGTATCTTATGGTGCTTGCATCCAATGTTCAAACAGTTCTTGTCGAGTAGCGTATCATCCACTATGTGCACGTGCAGCCGGTCTTTGCGTTGAGCTGGAGAATGAGGACAGGCTCTATCTACTTTCTGTAGATGATGATGAGGATCAGTGCATTCGCTTGCTTTCTTTCTGCAAGAAACATCGGCAGCCATCTCATGAACATTCTGTAGCCGATGAACGTGCTGGAGTTATGGGTCAATGTTCAGACTATGAACCACCACCCAATCCATCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGTAGGAGAGGCCGAAAAGAACCTGAAGCACTTGCAGCTGCATCATCAAAACGTTTGTTTGTGGAGAATCAACCTTACTTAGTTGGTGGATACTGCCAACATGGATTGTCGAACAACCTAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCGAACAAAGGCTGAGAACCTCTATGGTTAATGCTGCAGACAGTATACTTTCCATTGCCGAGAAGTATAAGTACATGAGGGAAACCTTTCGGAAACAGTTAGCATTTGGGAAATCCAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATACACCGGTGAACTTGTTAGACCTTCTATAGCTGACCGGAGAGAGCGCTTTATATACAATTCTTTGGTGGGTGCTGGAACATATATGTTTCGGATTGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCCTGTGCACCAAATTGCTATTCAAGAGTCATTAGTGTTAATGGCGATGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAATGGGAGGAGCTTACATATGATTATAGATTTTTCTCAATAGATGAACGGCTTGCCTGTTACTGTGGCTTCCCAAAATGTCGAGGTGTAGTAAATGATACCGAGGCAGAAGAGCGAGCTACTACCCTATATGCACCACGAAGTGAATTAGTAGATTGGAAGGGAGAATGA 3267 0.4169 MAFPPQIEENGGGGGAVEEDTTIDIHTTLGAPIRYLPLDHLYSSTSPCSGSSNVMSKKVKARKLNNNSSSINDNNNNNHNGEEIDSPIDNKKTTSSSMVVYPKPKPKPPILFVYSRRRKRSLFKTTPFCNELQNCERTVLKRRKIGSTELERLGVDWNALGKFDGPRLRECRNQIGNSGFDGSNNSNKCGSVVKIHKLFPDSRALKRWVMLNFDEADPEAFIGLKCKVYWPMDLRSYTGCVKGYDRETKLHHIEYDDGDEEDLTLSNENVKYHVSRNDMEHLKLSYAKVRDNSVSDYDVEEMLALAASMNDCQDYEPGDIIWAKLTGYAMWPAVVLDESLASNCKGLKTLLGGRSVPVQFFGTHDFARVRVQQVKSFLSGLLSDLHSKCKKQSFFEGLDEAKRYLSAQKLPLEMLELQKRCTAEDSKNVSGEDGGCTDSGEDHSNEGTLAALQSIDTCPYEVGDLQILSLGKKVGDSASFGDGRSIWPEGYTAVRKFTSVTDSTVSVPYKMEVLRDPECRFRPLFRVTVDGGEQFDGHTPSTCWNQVYERIRKLEKVVSEGSVADGVVESGYESGSDMFGFSNPKVAKLIKGLSKSKVSSKNSVCKLGSGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGKLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISRDRWRLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSHEHSVADERAGVMGQCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASSKRLFVENQPYLVGGYCQHGLSNNLEPSGRGVCSKFFCSEQRLRTSMVNAADSILSIAEKYKYMRETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRRERFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGVVNDTEAEERATTLYAPRSELVDWKGE 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00379 1088 SMART fyrc_3 524 617 IPR003889 GO:0005634
Car03g00379 1088 Pfam PWWP domain 318 405 IPR000313 -
Car03g00379 1088 Pfam F/Y rich C-terminus 522 596 IPR003889 GO:0005634
Car03g00379 1088 SMART PHD_3 623 670 IPR001965 -
Car03g00379 1088 SMART PHD_3 733 799 IPR001965 -
Car03g00379 1088 ProSiteProfiles PWWP domain profile. 317 380 IPR000313 -
Car03g00379 1088 ProSiteProfiles Zinc finger PHD-type profile. 621 672 IPR019787 -
Car03g00379 1088 CDD ePHD_ATX1_2_like 684 798 IPR041956 -
Car03g00379 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 669 IPR013083 -
Car03g00379 1088 ProSiteProfiles Post-SET domain profile. 1048 1064 IPR003616 -
Car03g00379 1088 Pfam SET domain 935 1041 IPR001214 GO:0005515
Car03g00379 1088 ProSiteProfiles FYR domain FYRC motif profile. 520 606 IPR003889 GO:0005634
Car03g00379 1088 SMART PWWP_4 315 378 IPR000313 -
Car03g00379 1088 Gene3D SET domain 879 1077 IPR046341 -
Car03g00379 1088 MobiDBLite consensus disorder prediction 47 101 - -
Car03g00379 1088 SMART fyrn_3 472 516 IPR003888 GO:0005634
Car03g00379 1088 Gene3D - 305 415 - -
Car03g00379 1088 Pfam F/Y-rich N-terminus 463 513 IPR003888 GO:0005634
Car03g00379 1088 SUPERFAMILY Tudor/PWWP/MBT 310 413 - -
Car03g00379 1088 SMART PostSET_3 1048 1064 IPR003616 -
Car03g00379 1088 Pfam PHD-zinc-finger like domain 677 798 - -
Car03g00379 1088 ProSitePatterns Zinc finger PHD-type signature. 624 669 IPR019786 -
Car03g00379 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 670 801 IPR013083 -
Car03g00379 1088 Pfam PHD-finger 636 670 - -
Car03g00379 1088 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 17 1085 - -
Car03g00379 1088 ProSiteProfiles Extended PHD (ePHD) domain profile. 675 799 IPR034732 -
Car03g00379 1088 PANTHER PHD FINGER PROTEINS 17 1085 - -
Car03g00379 1088 CDD PHD_ATX1_2_like 623 669 IPR042010 -
Car03g00379 1088 SUPERFAMILY SET domain 922 1061 IPR046341 -
Car03g00379 1088 ProSiteProfiles FYR domain FYRN motif profile. 457 516 IPR003888 GO:0005634
Car03g00379 1088 MobiDBLite consensus disorder prediction 47 83 - -
Car03g00379 1088 CDD SET_SETD1-like 912 1060 - -
Car03g00379 1088 SUPERFAMILY FYVE/PHD zinc finger 618 685 IPR011011 -
Car03g00379 1088 Gene3D - 458 598 - -
Car03g00379 1088 ProSiteProfiles SET domain profile. 924 1042 IPR001214 GO:0005515
Car03g00379 1088 Gene3D - 222 275 - -
Car03g00379 1088 SMART set_7 924 1048 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00379 Car-Chr3 16792003 16804021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00379 624 769 C2H2 Transcription Factor Family AT3G14740 39.073 9.96e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car03g00379 zf-HC5HC2H_2 9e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00379 - - gmx:100806736 1761.89