Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00370 ATGCAACAGATTCAATGCCAGTTTAATGTTAGAATCGCTTCGTGGGAAGAGGATGATGTAGTAGCAAAGCTTCATGCAATTCTTAGGCCATTTCTTTTGCGTAGAATGAAGTCTGATGTTGAGCTAATGTTGCCACGGAAAAAAGAGATCATTGTATATGCTAACATGACTGAGCATCAGAAGAGCTTGCAGGAACATTTAATTAATGAGACACTAGGGAAATATTTGAATGACAAACTTTCAATTGGACGCTCTGTGACAAAGCTCAATAATTTGGTTCTTCAACTTAGGAAAGTCTGTAACCATCTTGACCTCCTAGAATCGGCTTTTGATCGTTCATGTAAGTACCGTGTTCTGATCTTCAGTCAGTGGACTAGAGTGTTGGATATAATGGATTATTATTTCAGTGAAAAAGGCTTCAAAGTTTGCAGGATTGATGGTTCAGTGAAACTGGAGGATAGGAAACGACAGATCCAGGACTTCAATGATACAAACAGCAATTGCCGAATCTTCCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGGTACTTTTGACTTTTCCTGTTTGGCATTTATCTGTTTGCTTCACAGCATTTAACTTAAACTATGCTTACGACTTCATTGTACTACAGAATCCTCAAATGGATTTACATGCCATGGATAGATGTCATAAAATCGGTCAAACAAAGCATGTTCATGTTTACAGGCTCGCAACTGCTCAATCAGTAGAGGGTCGAATGTTAAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAAGAGCGTACAAAGCCTGCCATTGTGGATGAGATGGAGGTTTGTGTCATAGGCTTGGCTGAAATTTTTAGGCTTGGCTCATTTAAAGATGAAGCAAAAGAGATTGTTGAGATGTCAACAGTGGAAGCCTATCGCATGGCTATGATAGGTGTGGTTAGATGGGTGAGAATGAACATGAAACCTAACAAGACTAGAGTCTTCTTCACTAGCATGTCACCTTCTCATGGAAGGCAAGTTTAG 1089 0.4004 MQQIQCQFNVRIASWEEDDVVAKLHAILRPFLLRRMKSDVELMLPRKKEIIVYANMTEHQKSLQEHLINETLGKYLNDKLSIGRSVTKLNNLVLQLRKVCNHLDLLESAFDRSCKYRVLIFSQWTRVLDIMDYYFSEKGFKVCRIDGSVKLEDRKRQIQDFNDTNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWVLLTFPVWHLSVCFTAFNLNYAYDFIVLQNPQMDLHAMDRCHKIGQTKHVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTKPAIVDEMEVCVIGLAEIFRLGSFKDEAKEIVEMSTVEAYRMAMIGVVRWVRMNMKPNKTRVFFTSMSPSHGRQV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00370 362 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 18 116 - -
Car03g00370 362 Gene3D - 227 273 IPR027417 -
Car03g00370 362 Gene3D - 45 113 IPR027417 -
Car03g00370 362 Gene3D - 116 197 IPR027417 -
Car03g00370 362 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 311 360 IPR026057 GO:0016740
Car03g00370 362 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 215 297 - -
Car03g00370 362 CDD SF2_C_SNF 103 252 - -
Car03g00370 362 PANTHER SNF2/RAD54 HELICASE FAMILY 18 116 - -
Car03g00370 362 PANTHER SNF2/RAD54 HELICASE FAMILY 215 297 - -
Car03g00370 362 PANTHER SNF2/RAD54 HELICASE FAMILY 114 197 - -
Car03g00370 362 Pfam SNF2-related domain 12 105 IPR000330 GO:0005524|GO:0140658
Car03g00370 362 Pfam Helicase conserved C-terminal domain 111 240 IPR001650 -
Car03g00370 362 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 98 288 IPR001650 -
Car03g00370 362 SMART helicmild6 129 242 IPR001650 -
Car03g00370 362 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 114 197 - -
Car03g00370 362 Gene3D - 16 44 IPR038718 -
Car03g00370 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 288 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00370 Car-Chr3 14266658 14269108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00370 98 262 RAD5 or RAD16-like Gene Family AT5G43530 30.909 2.00e-18 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car03g00370 PC-Esterase 3.6e-07 CL0264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00370 K19001 - gmx:100777687 399.053