LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car03g00349	aTGTCTTCTTTACTTTGTTGTTCCACTGCAATGTGTGTAGCAATTTTTCTACTTCAGCTACGTTCCTTTGGAGTTTCACTTTCACACCCTTATAGAATCATTCATTTACCAGGTCAACCAAATGTTGAGTTTAATCACTTTTCAGGTTATGTCAATGTTGATGACAAAAACAACAAGGCTTTGTTTTTCTACTTTGTTGAAGCTCAACAGGATTCAGTTTCTAAACCTCTTGTTCTTTGGCTCAATGGAGGACCTGGTTGTTCTTCTATTGGTGTTGGTGCATTTTCAGAAAATGGACCTTTTAGGCCTAAGGGTGAGGGTTTGGTTAGGAATCAATTCAGCTGGAACACAGAGGCCAATATGTTGTATTTGGAATCACCAATTGGAGTAGGGTTTTCTTATTCAACTGATACTTCATCTTATGGTGGTGTAAATGACAAAATTACAGCCAGGGATAATCTAATCTTCTTGCAAAACTGGTTTGTACAGTTTCCACAATACAGAAACAGAAGTTTGTTCATTGTTGGAGAGAGCTATGCTGGTCATTATGTTCCTCAACTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGCTGTTCAATTTAAAAGGCATTGCTCTTGGTAATCCAGTTCTAGAATTCTCAGCAGATTTTAATTCAAGAGCTGAGTTCTTCTGGTCACATGGATTAATCTCAGACTTAACATACAAAATGTTCACTTCTGTTTGTAACTATTCAAGATATGTGAGAGAATACTATAATGGTGCTGTTTCTCCCGTTTGTTCAAGTGTCATGAGCCAAGTTAGTACAGAAACAAGTAGATTTGTTGACAAGTATGATGTGACTCTTGATGTTTGTATATCTTCTGTGTTTTCACAAACCAAAATCCTCAATCCTAAGCAAGTGACTGAAACGATTGATGTATGCGTGGAAGATGAGACAGTCAATTATCTTAACAGGAAAGATGTTCAATCAGCATTACATGCACGGTTGGTTGGGGTACAAAGATGGACTCCTTGCAGCAATGTATTGGATTATGATTTGCATGACTTGGAGATTCCAACAATCACCGTAGTAGGAAAGCTAGTCAAGGCTGGAATTCCAGTATTGGTCTACAGTGGTGATCAAGATTCAGTTATTCCGTTGACTGGAAGTAGAACTTTAGTACATCAATTGGCTAAAGAATTGAGAATGAATACCACTGTGCCATACAGGGTGTGGTTTCAGAAGCAGCAGGTTGGTGGATGGACTCAAGTTTATGGTAACATACTATCATTTGCAACAGTCAGAGGAGCATCACATGAAGCACCATTTTCACAGCCTGAGAGATCACTTGTGCTGTTCAAGTCCTTCTTAGAAGGAAGACCTCTACCAGAAGAATTTTGA	1389	0.3859	MSSLLCCSTAMCVAIFLLQLRSFGVSLSHPYRIIHLPGQPNVEFNHFSGYVNVDDKNNKALFFYFVEAQQDSVSKPLVLWLNGGPGCSSIGVGAFSENGPFRPKGEGLVRNQFSWNTEANMLYLESPIGVGFSYSTDTSSYGGVNDKITARDNLIFLQNWFVQFPQYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFSADFNSRAEFFWSHGLISDLTYKMFTSVCNYSRYVREYYNGAVSPVCSSVMSQVSTETSRFVDKYDVTLDVCISSVFSQTKILNPKQVTETIDVCVEDETVNYLNRKDVQSALHARLVGVQRWTPCSNVLDYDLHDLEIPTITVVGKLVKAGIPVLVYSGDQDSVIPLTGSRTLVHQLAKELRMNTTVPYRVWFQKQQVGGWTQVYGNILSFATVRGASHEAPFSQPERSLVLFKSFLEGRPLPEEF	462

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car03g00349	462	ProSitePatterns	Serine carboxypeptidases, serine active site.	174	181	IPR018202	GO:0004185
	Car03g00349	462	PANTHER	CARBOXYPEPTIDASE	6	460	-	-
	Car03g00349	462	Pfam	Serine carboxypeptidase	38	455	IPR001563	GO:0004185\|GO:0006508
	Car03g00349	462	Gene3D	-	310	346	-	-
	Car03g00349	462	SUPERFAMILY	alpha/beta-Hydrolases	34	459	IPR029058	-
	Car03g00349	462	ProSitePatterns	Serine carboxypeptidases, histidine active site.	425	442	IPR033124	GO:0004185
	Car03g00349	462	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	6	460	IPR001563	GO:0004185\|GO:0006508
	Car03g00349	462	Gene3D	alpha/beta hydrolase	29	289	IPR029058	-
	Car03g00349	462	Gene3D	-	357	455	-	-
	Car03g00349	462	PRINTS	Carboxypeptidase C serine protease (S10) family signature	111	123	IPR001563	GO:0004185\|GO:0006508
	Car03g00349	462	PRINTS	Carboxypeptidase C serine protease (S10) family signature	124	134	IPR001563	GO:0004185\|GO:0006508
	Car03g00349	462	PRINTS	Carboxypeptidase C serine protease (S10) family signature	160	185	IPR001563	GO:0004185\|GO:0006508
	Car03g00349	462	PRINTS	Carboxypeptidase C serine protease (S10) family signature	425	438	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car03g00349	Car-Chr3	8416763	8422971	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car03g00349	318	458	Calmodulin-binding Proteins	AT2G22960	27.660	2.79e-15	72.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car03g00349	K16297		-	gmx:100805130	821.617