Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00346 ATGTCTATATGCTGTGTACCAAACCTACTTCACATTACGGCTGATGCATTTGGCATATGCTTATCAAGTGAAAGAAACTATCTAACTTGGAATATGGGATATGGACAACTCAAAAGGGTCCCTCAAATGGATCCAAGAAGACATGGAAAGTTGCCACTATCTTCACAAACATCAGAGGCTAAAGAGAAAGAGGATGACACATTATTAAATGATGAATTTGATGCTTATTATGCATCAAATTCTTGGTCTTCAGACACTGATTTGTCTACTATGGTTTCTGCCCTCTCTCAAGTTATGGGAACATCTACCAATAAAAATAATCCACACATGACACAATCAATTGCAACCTCAACTAACATGGTCAAGGAAGAACCTCAACCTCTTCTAGATCAAGAGAGCACAAAGAAACCACACTACAGAGGAGTGAGACAGAGACCTTGGGGAAAATGGGCAGCTGAAATTCGTGACCCAAAAAAAGCAGCAAGAGTTTGGTTAGGAACATTTGATAATGCTGAAGATGCAGCTATTGCATATGATAAAGCAGCACTCAAATTCAAAGGCACAAAAGCTAAGCTTAATTTCCCTCAAAGAATAGTTCAATGCAACAACAATTCTAATATGTTACAACAACAACAAGGTTCTTATAGCAACAATTTTAATATGTTACAACAACAAGGTTCTTATAACACTTCCACTAGTGCTACTAATAGTTCCATTCAACAAAGTGGTTGTGTTTCTAATGATCAACAAGTTTTCCCAAACTTGTTTCAATATGCTCAAATTCTTTCTAGTGATGCTGAATTCCCTTATTATGCATCCAATCTCTTCAACCAACAACAACAACAAGGAGATGATCATCATCCACCAAGCTAG 873 0.3711 MSICCVPNLLHITADAFGICLSSERNYLTWNMGYGQLKRVPQMDPRRHGKLPLSSQTSEAKEKEDDTLLNDEFDAYYASNSWSSDTDLSTMVSALSQVMGTSTNKNNPHMTQSIATSTNMVKEEPQPLLDQESTKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDNAEDAAIAYDKAALKFKGTKAKLNFPQRIVQCNNNSNMLQQQQGSYSNNFNMLQQQGSYNTSTSATNSSIQQSGCVSNDQQVFPNLFQYAQILSSDAEFPYYASNLFNQQQQQGDDHHPPS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00346 290 SMART rav1_2 138 201 IPR001471 GO:0003700|GO:0006355
Car03g00346 290 MobiDBLite consensus disorder prediction 41 65 - -
Car03g00346 290 SUPERFAMILY DNA-binding domain 138 196 IPR016177 GO:0003677
Car03g00346 290 PANTHER DNA-BINDING DOMAIN 56 273 IPR044808 GO:0003700|GO:0009873
Car03g00346 290 Pfam AP2 domain 137 187 IPR001471 GO:0003700|GO:0006355
Car03g00346 290 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 56 273 - -
Car03g00346 290 PRINTS Ethylene responsive element binding protein signature 177 197 IPR001471 GO:0003700|GO:0006355
Car03g00346 290 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Car03g00346 290 CDD AP2 137 195 IPR001471 GO:0003700|GO:0006355
Car03g00346 290 Gene3D AP2/ERF domain 138 197 IPR036955 GO:0003700|GO:0006355
Car03g00346 290 ProSiteProfiles AP2/ERF domain profile. 138 195 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00346 Car-Chr3 8362796 8367574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00346 91 276 AP2-EREBP Transcription Factor Family AT5G13330 46.277 5.54e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car03g00346 AP2 5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00346 - - cam:101515629 381.333