Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00343 ATGGATGCGCATCTTCGTTACTTCAAACAGGGGTATGAACTATTGCATCAAATGGAGCCGTACATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAGCAAGCAGCTCTCAATGAAAGAATGCAAGATTACAAACGGCAGATTGATCGAGAAAGTAGGTGGGCTTCTAATGGTTCTAATGGCTCTCCTAATGGAGATGGTATACAAGCTATTGGTAGAAGTTCACATAAGATGATAGAAGCAGTAATGCAAAATGCTGCAAAGGGAAAGGTTCAAACGATTCGACAAGGTTATCTCTCAAAGCGTTCATCAAACTTAAGGGGGGACTGGAAAAGGAGGTTTTTCGTTCTTGATAGCCGGGGTATGCTGTATTACTACCGTAAACAATGCAGCAAATCATCTGGGTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGTCTTCTAAGTAGATGGCTTTCTTCTCATCATCACGGTGGAGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCGACAATCAAAGTTGACGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCGCCCACAAAGAACTACACTTTGCAGGCAGAGAGTGCATTGGACCAAATGGATTGGATTGAAAAAATCACAGGTGTTATTGCCTCATTGCTGAGTTCTCAGATTCCTGAAAGGTTGTTACCTGCAAGTCCAATGGGAAGTGGTCATCATAGGTCTACTAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTGTGGTGTTGAAGAAAGTGCAGCCGATAGAAGTCTTGTGTCTTCACATATGGAGCGTGCCTCTAGAAGTTTAAACCAGCAGCGATCGTGTAATAAAAGTGAGAAACCGATTGACGTGTTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGTGGGGCCCCTGAACCGGATTGGGCATCACTAAATCTCGGCGTTCTTGTTTGCATTGAATGTTCTGGTGTTCATCGTAACCTTGGTGTGCACATATCAAAGGTACGCTCTCTTACATTGGACGTTAAGGTGTGGGAACCTTCTGTGATAAGTTTATTTCAGTCTCTTGGGAATACATTTGCCAACTCTGTCTGGGAGGAACTGTTGCAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTCGAGCAAGCCTGATAAGCCACTGATGCTTTTCATCACCAGACCTTGTCAGTCTGATTCTCTATCGGTGAAGGAAAAGTTCATCCATGCAAAGTACGCAGAGAAGCTTTTTGTTCGCAAGCCAAAGGACAGCCAATACAGACTCCTAGTGGCACAACAGATCTGGGAGGCTGTTCGTGCTAATGACAAAAAAGCCGTATACCGCTACATTGTTAATTCTGATGTTGATGTCAACGTTGTTTATGAGCAAGCATGCAACAACTCTTTAACCCTTGCGAAAGTAATGCTATTACAGGAGCAGGCAAGCCACGATAACGGCTCCAATTTAGCAGGGAACACATTGGACTGGTCCTCTAATTGCCCTTTGAATTTGGTCAGCACTAAAGAAGGCGGCCAGCCGATGGACAATCTAGTTGGGTCCACATTACTTCACGTTGCTTGCGAAACTGCGGATATTGGAATGGTGGAGCTCCTCCTTCAATATGGTGCAAATATAAATGCAACTGATTTGAGAGGCCAAACTCCTTTACATCGCTGCATTCTCAAAGGAAGATCTACAATTGCAAGATTACTGCTTTCAAGGGGAGGCGATCCTCGAGCTACAGACGACGAGGGAAGAACCCCTATTGAGCTTGCTGCAGAATCAAATGCTGACGACAGACAAGTCCATGCTCCATCAACCGATTCCAATGGATGA 1914 0.441 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQDYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQNAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSGHHRSTSESSSFESSDFDHCGVEESAADRSLVSSHMERASRSLNQQRSCNKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVPTGSSKPDKPLMLFITRPCQSDSLSVKEKFIHAKYAEKLFVRKPKDSQYRLLVAQQIWEAVRANDKKAVYRYIVNSDVDVNVVYEQACNNSLTLAKVMLLQEQASHDNGSNLAGNTLDWSSNCPLNLVSTKEGGQPMDNLVGSTLLHVACETADIGMVELLLQYGANINATDLRGQTPLHRCILKGRSTIARLLLSRGGDPRATDDEGRTPIELAAESNADDRQVHAPSTDSNG 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00343 637 ProSiteProfiles PH domain profile. 98 234 IPR001849 -
Car03g00343 637 Pfam Ankyrin repeats (many copies) 564 618 IPR002110 GO:0005515
Car03g00343 637 Gene3D Arf GTPase activating protein 285 450 IPR038508 -
Car03g00343 637 MobiDBLite consensus disorder prediction 55 76 - -
Car03g00343 637 SUPERFAMILY Ankyrin repeat 463 623 IPR036770 -
Car03g00343 637 CDD ArfGap 309 438 - -
Car03g00343 637 ProSiteProfiles Ankyrin repeat profile. 577 609 IPR002110 GO:0005515
Car03g00343 637 SUPERFAMILY PH domain-like 99 249 - -
Car03g00343 637 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 630 - -
Car03g00343 637 ProSiteProfiles Ankyrin repeat region circular profile. 544 575 - -
Car03g00343 637 SMART PH_update 99 236 IPR001849 -
Car03g00343 637 Pfam Putative GTPase activating protein for Arf 309 446 IPR001164 GO:0005096
Car03g00343 637 Gene3D - 451 626 IPR036770 -
Car03g00343 637 MobiDBLite consensus disorder prediction 253 269 - -
Car03g00343 637 SMART ANK_2a 577 606 IPR002110 GO:0005515
Car03g00343 637 SMART ANK_2a 544 573 IPR002110 GO:0005515
Car03g00343 637 ProSiteProfiles ARF GTPase-activating proteins domain profile. 306 451 IPR001164 GO:0005096
Car03g00343 637 ProSiteProfiles Ankyrin repeat profile. 544 576 IPR002110 GO:0005515
Car03g00343 637 Coils Coil 33 53 - -
Car03g00343 637 Gene3D - 91 243 IPR011993 -
Car03g00343 637 SMART arf_gap_3 306 451 IPR001164 GO:0005096
Car03g00343 637 SUPERFAMILY BAR/IMD domain-like 1 121 IPR027267 -
Car03g00343 637 Pfam PH domain 100 233 IPR001849 -
Car03g00343 637 MobiDBLite consensus disorder prediction 59 75 - -
Car03g00343 637 ProSiteProfiles Ankyrin repeat region circular profile. 577 609 - -
Car03g00343 637 MobiDBLite consensus disorder prediction 601 637 - -
Car03g00343 637 PRINTS HIV Rev interacting protein signature 318 337 IPR001164 GO:0005096
Car03g00343 637 PRINTS HIV Rev interacting protein signature 337 354 IPR001164 GO:0005096
Car03g00343 637 PRINTS HIV Rev interacting protein signature 360 381 IPR001164 GO:0005096
Car03g00343 637 Gene3D Arfaptin homology (AH) domain/BAR domain 1 56 IPR027267 -
Car03g00343 637 CDD PH_ACAP 101 238 - -
Car03g00343 637 MobiDBLite consensus disorder prediction 247 270 - -
Car03g00343 637 SUPERFAMILY ArfGap/RecO-like zinc finger 306 446 IPR037278 -
Car03g00343 637 PANTHER CENTAURIN/ARF 1 630 IPR045258 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00343 Car-Chr3 8265749 8270879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00343 318 445 C2H2 Transcription Factor Family AT4G21160 42.636 2.87e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00343 K12489 - gmx:100789134 1094.72