Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00330 ATGACTTCAATCACTCTTTCACCAAATTCTCCCCCTTCTGCAATTTCTCCATTATCTAATGGTGGTAGTGTTGTTGTTCTATCAccacccccttcttcttctacttccacccctccttcacctccaacttcttctcaatccaatcaaacatctaattcccctcctccttcatcatcatcatcatcatcatctcctcctccttcatcatcatcatcatcatcatcatcatcatctcctcctccacaaacagtacctgtaactcctcctccttccccttctctttctcctcctcctcctcctccaccATCGAAAACACCGTCACCGGCAACTTCTCCACCACCACCACCAATATCTCCAACTCCACCAATTGTAACACCACCTCCTGCACCTCCTCCAACTCAGACTTCACCTACACTTCCAAATTTGTCCCCACCACCTCCATCAGTTGGTTCCCCTCCTCCTTCTAAACCAATTTCCCCGTCTCCACCTCCTCCTCCGGCTAATGTGCCAAAACCACCACCATCCACCAATCCTCCTCCTGCACCAAAAGCAGAGCCACCAAAAActtctccttcacctccttcacaagcatcccctccatcagtttcacaatctcctcctccttcaccttcCAATGTTGTTCCACCGCCATCCACATTGCCATCAACTCCTCCTCCTTCAGTTCCTTCAGGATCTGCACCTCCAGCTTCTTTGCCTCGTCCCCCTACTAACGAAACGGTACCTGGTGGTCCAGCTGTTTCATTGCCTTCTATTCCGACTGAGAAACCGACTGCTAGACCAACTGTTGATGGAACTCGTAATATAGCTGCAAACAACTCACCTTCCAATTCAGGAGGGTTGAATACCGGAGGAGCTGCTGCGATTGGTGTGGTAGTTAGTTTATTTGTCCTCAGCCTTCTTGGTATGACTGTTTGGTTTGTACAGAAAAAGAAGAAGGGAAAAGGGCCAAGAGCTGAATATGTCGCACCTTCGCCGTTTACCTCGTCTCATAATTCAGGTACCTTGTTCTTGAAGCCACACTCTCCAGCCAATTTTATAGGTAGTGGCAGCGGTAGTGAATTTGTGAATTCACCATCAGAGCCAGGTGGAGTAAATAATTCAAGATCATGGTTCACGTATGAAGAACTTAACCAAGCAACAAACGGATTTTCAGAGCAGAATCTGTTGGGAGAAGGTGGATTTGGTTGTGTCTACAAAGGTTTGCTTGTAGATGGAAGAGAGGTAGCTGTGAAACAGCTTAAAATTGGTGGTGGACAAGGGGAACGCGAATTCAGAGCAGAAGTTGAGACTATTAGTCGAGTACATCATCGTCATCTGGTTTCTTTGGTTGGTTATTGTATATCTGAACATCAAAGGTTGCTTGTCTACGACTATGTTCCCAACAATACCCTTCATCACCATCTACATGATGAAAAAGGACCCGTTTTGGGTTGGCCTATCAGAGTTAAGGTTGCCGCTGGTGCAGCTCGTGGAATAGCTTACCTACATGAAGATTGCCATCCACGCATTATTCATCGAGATATCAAGTCATCAAACATCCTTCTCGATCGCAACTTTGAAGCTCTAGTTTCAGATTTTGGGCTTGCAAAATTAACATTGGATTCAAACACACACATAACTACACGCGTAATGGGAACTTTTGGCTATATGGCACCAGAATATGCCACAAGTGGGAAATTGACTGACAAGTCTGATGTATATTCCTTTGGTGTTGTGCTTTTGGAGCTAATTACCGGTCGGAAACCTGTAGATGCCTCTCAGCCACTTGGTGATGAGAGCCTAGTTGAATGGGCTCGACCTCAATTGATCGAAGCACTCGATAAAGAGGACTTTGAAACTTTGGTGGATCCAAGACTAGGAAAGAATTACGATAGAAACGAAATGTTTAGGATGGTCGAGGCTGCCGCAGCCTGCGTGCGTCATTCCTCAGTTAAGCGGCCACGAATGAGTCAGGTAGTGAGAGCTTTTGATTCGATGGACGAGTTTTCGGATCTGAATAATGGAATGAAACCAGGGCAGAGTTCAGTGTTTAATTCTTCACAGCAATCTGCACAGATCAGAATGTTTAGGAGGATGGCTTTTGGAAGCCAAGATAGTTCCAGTTTCTTTAATGAGTCTCAAAGTAGCTATAGGAGTAGAGATCAAGATTCTACAACTATGTTCCCCCAAAATAAATCTGGGCCTTGGAATGTTTGA 2217 0.3915 MTSITLSPNSPPSAISPLSNGGSVVVLSPPPSSSTSTPPSPPTSSQSNQTSNSPPPSSSSSSSSPPPSSSSSSSSSSSPPPQTVPVTPPPSPSLSPPPPPPPSKTPSPATSPPPPPISPTPPIVTPPPAPPPTQTSPTLPNLSPPPPSVGSPPPSKPISPSPPPPPANVPKPPPSTNPPPAPKAEPPKTSPSPPSQASPPSVSQSPPPSPSNVVPPPSTLPSTPPPSVPSGSAPPASLPRPPTNETVPGGPAVSLPSIPTEKPTARPTVDGTRNIAANNSPSNSGGLNTGGAAAIGVVVSLFVLSLLGMTVWFVQKKKKGKGPRAEYVAPSPFTSSHNSGTLFLKPHSPANFIGSGSGSEFVNSPSEPGGVNNSRSWFTYEELNQATNGFSEQNLLGEGGFGCVYKGLLVDGREVAVKQLKIGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHHHLHDEKGPVLGWPIRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDRNFEALVSDFGLAKLTLDSNTHITTRVMGTFGYMAPEYATSGKLTDKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPQLIEALDKEDFETLVDPRLGKNYDRNEMFRMVEAAAACVRHSSVKRPRMSQVVRAFDSMDEFSDLNNGMKPGQSSVFNSSQQSAQIRMFRRMAFGSQDSSSFFNESQSSYRSRDQDSTTMFPQNKSGPWNV 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00330 738 Gene3D Transferase(Phosphotransferase) domain 1 466 683 - -
Car03g00330 738 SMART serkin_6 390 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00330 738 MobiDBLite consensus disorder prediction 711 738 - -
Car03g00330 738 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 128 713 - -
Car03g00330 738 SUPERFAMILY Protein kinase-like (PK-like) 370 662 IPR011009 -
Car03g00330 738 CDD STKc_IRAK 396 661 - -
Car03g00330 738 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 128 713 - -
Car03g00330 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Car03g00330 738 ProSitePatterns Protein kinases ATP-binding region signature. 396 418 IPR017441 GO:0005524
Car03g00330 738 Gene3D Phosphorylase Kinase; domain 1 363 465 - -
Car03g00330 738 MobiDBLite consensus disorder prediction 81 246 - -
Car03g00330 738 MobiDBLite consensus disorder prediction 271 287 - -
Car03g00330 738 MobiDBLite consensus disorder prediction 1 287 - -
Car03g00330 738 MobiDBLite consensus disorder prediction 1 31 - -
Car03g00330 738 Pfam Protein tyrosine and serine/threonine kinase 393 662 IPR001245 GO:0004672|GO:0006468
Car03g00330 738 ProSiteProfiles Protein kinase domain profile. 390 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00330 738 MobiDBLite consensus disorder prediction 39 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00330 Car-Chr3 7884988 7890595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00330 261 722 Trihelix Transcription Factor Family AT5G38560 68.076 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Car03g00330 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00330 - - gmx:100784873 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00330 03 7884988 7890595 Car03g00330 03 7884988 7890595 ECH