Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00279 ATGGTGGTTGTTTTGGCATCATCCGAAGTTGTTGGTGGTGGGATTGGATGTTGGGACCTTCACACAGGTGCTGAGCAGACCCGCTACAAATCATTTTCTTCCCCTTATCATGGCCTTGTCTCTGTTGGTGATCGATTCCTTGCATCTTCTCAGGACCGAGATGGATCATCTACCTCTGGTTCTGTTTTTTACTGGTCATGGTCCAAGCCTCAAGTTGAAGTTAAGAACTTTCCCGCCGAACCTATTAAATCTCTTGCTGCTAATCACAGTGGTACCTATCTAGCCGGTGGAGGTTTGTCAGGTGACATATACATGTGGGAGGTTGAAAGCGGCAGATTGCTTAAAAAGTGGCATGCCAGTAATCAGGCGATTCGTTGCCTGGTATTTTCGGAAGATGACTCACTTCTGATATCTGGATCTGTAGATGGAACAGTACGAGTTTGGTCTCTCTTCATGATATTTGATGATTTGAGAAGCTGGGAAGCAAGCTCGACTTATGAGTATAGTTTTACAGAGCACGTCGGCTCTCATGGGTGTGTAAATGATCTCGTGATTGGTTATGGAGGGTGCAGTGCAATTATAGTTTCAGCATCAGATGATAGGACTTGTAAGGTATGGAGCCTATCTAGTGGAACACTACAAAGAACATATAGCGCCGTTGAGAAATTTTTAATTTCTGGATCCGAGGATGGAATAATTCGAGTTTGGAATGCCAGTACTCATAACATCGTCCGCGTGTTTAAGAATGCTAAAGGACCCATAACTAATATTCTTGTTCTTAGACAAGAAAATGACTCAAGTAATCATATGTCTTCCAATTTACAAGCAGTATCAAAAAAGCAGGGATCTCATATATCCCCTTTGGAAAAATATACAAATTCAATAGATGAAGACTCAGATAAAAAGACAGTTCTCAGTCTTGGGGGTTGCAAGAGATCCATGGATGTTTCATATCTTAGTTCTCATGTGATTTCTACTTACAGTAATGAACTTCAGCATCAAGGTTCAGCTGCTGCTTCTGAAATGGAGATAGAGAAACTAAAACGTGATTGCCAAAAGTCGATGCAGATGGTTAATCAATGGAAGAAAATGTATGAAAACTTGCATCAATTTTGTGTAAAGGAGCTGCTAGTTGAAAATAGCAAAGACATATTATTCTAG 1161 0.4083 MVVVLASSEVVGGGIGCWDLHTGAEQTRYKSFSSPYHGLVSVGDRFLASSQDRDGSSTSGSVFYWSWSKPQVEVKNFPAEPIKSLAANHSGTYLAGGGLSGDIYMWEVESGRLLKKWHASNQAIRCLVFSEDDSLLISGSVDGTVRVWSLFMIFDDLRSWEASSTYEYSFTEHVGSHGCVNDLVIGYGGCSAIIVSASDDRTCKVWSLSSGTLQRTYSAVEKFLISGSEDGIIRVWNASTHNIVRVFKNAKGPITNILVLRQENDSSNHMSSNLQAVSKKQGSHISPLEKYTNSIDEDSDKKTVLSLGGCKRSMDVSYLSSHVISTYSNELQHQGSAAASEMEIEKLKRDCQKSMQMVNQWKKMYENLHQFCVKELLVENSKDILF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00279 386 Gene3D - 156 305 IPR015943 GO:0005515
Car03g00279 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 216 IPR001680 GO:0005515
Car03g00279 386 Gene3D - 4 155 IPR015943 GO:0005515
Car03g00279 386 PANTHER WD-REPEAT PROTEIN 18 218 379 IPR045227 -
Car03g00279 386 PANTHER WD-REPEAT PROTEIN 18 2 217 IPR045227 -
Car03g00279 386 SMART WD40_4 70 107 IPR001680 GO:0005515
Car03g00279 386 SMART WD40_4 110 149 IPR001680 GO:0005515
Car03g00279 386 SMART WD40_4 210 237 IPR001680 GO:0005515
Car03g00279 386 SMART WD40_4 163 207 IPR001680 GO:0005515
Car03g00279 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 246 IPR001680 GO:0005515
Car03g00279 386 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 259 IPR011047 -
Car03g00279 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 117 150 IPR001680 GO:0005515
Car03g00279 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 117 150 - -
Car03g00279 386 ProSitePatterns Trp-Asp (WD) repeats signature. 224 238 IPR019775 -
Car03g00279 386 Pfam WD domain, G-beta repeat 118 149 IPR001680 GO:0005515
Car03g00279 386 Pfam WD domain, G-beta repeat 220 237 IPR001680 GO:0005515
Car03g00279 386 Pfam WD domain, G-beta repeat 169 207 IPR001680 GO:0005515
Car03g00279 386 PRINTS G protein beta WD-40 repeat signature 224 238 IPR020472 -
Car03g00279 386 PRINTS G protein beta WD-40 repeat signature 194 208 IPR020472 -
Car03g00279 386 PRINTS G protein beta WD-40 repeat signature 136 150 IPR020472 -
Car03g00279 386 Coils Coil 344 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00279 Car-Chr3 6322306 6327191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00279 80 279 Eukaryotic Initiation Factors Gene Family AT2G46290 23.423 1.04e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00279 K14829 - gmx:100791195 489.574