Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00240 ATGGGTTTCTCTCTGTTGTCAAAAGCATTCATTTTGTTCTTGTTTCTACTTTCTTCCTCTTGCTTCACTTCAACAGATGCTTATGATCCACTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAACATGGACACCTGATGGTTATGTTGCTGTTGTTACGGTGAACAACTTTCAACAATATCGTCACATCGCCGCACCTGGCTGGTCATTAGGATGGACATGGGCGAAAAAGGAGGTAATCTGGGGCATGGTGGGATCGCAGACCACTGAACAAGGCGATTGTTCGAAATTTAAGGGAAATGTTCCACATTGTTGTAAAAAGGATCCAACAGTTGTTGATTTACTTCCTGGAACACCTTACAATCAGCAAATTGCAAATTGCTGCAAAGGTGGAGTGCTCAGTTCATGGGCTCAGGATCCTACCAATGCAGTCGGGTCATTTCAAATCAGCGTTGGTAGAGCTGGTACCACAAATAAAACGGTTAAAGTCCCTAAAAACTTCACCTTGAAAGCGCCCGGACCGGGTTATACTTGCGGGCCAGCGAAAGTTGTGAGACCTACTCAATTTATTCAACCAGACAAAAGGAGAGTGACCCAAGCGCTAATGACATGGAATGTGACATGCACATATTCACAATTTCTAGCTCAGAAAACTCCCACATGCTGTGTCTCTCTTTCATCTTTCTATAACGAAACCATCGTACCCTGCCCAACATGTGCATGTGGCTGCCAGAGTAACTCGTCTCAATCGGGGAGTTGCATAGATCGAAATACGCCACATTTGGCATCGGTTGTTGCTGGTTCCGGAAAGAACAATTTTCAACCTTTGGTTCAATGTACTAGTCATATGTGTCCAATCCGAATCCACTGGCATGTTAAGCTTAACTACAAAGAATACTGGCGAGTGAAGGTTACGATTACTAATTTTAATTACCGAATGAATTATTCTGATTGGAACTTGGTTGTTCAGCATCCGAACTTCGATAATCTAACCCAGCTGTTCAGTTTCAACTATAAGTCATTAAATCCTTATGGTTCAATAAATGACACAGCAATGCTTTGGGGAGTTAAGTTCTATAATGATTTTCTTAATTATGCTGGCCCTAGTGGTAATGTTCAATCGGAGCTACTCTTCCGAAAAGACAAATCAACTTTTACTTTTGATAAGGGTTGGGCTTTCCCTCGAAGAATCTACTTCAACGGCGACAACTGTGTAATGCCGCCACCTGATGCATATCCGTGGTTACCTAACACCGGTTCTCGGCAAGAGGTTTCGATGTTTGCTTTAGTGATGGCATCTTTGGTAGTCTTGGTATTTTACGCACACGTTTAA 1341 0.4228 MGFSLLSKAFILFLFLLSSSCFTSTDAYDPLDPNGNITIKWDIITWTPDGYVAVVTVNNFQQYRHIAAPGWSLGWTWAKKEVIWGMVGSQTTEQGDCSKFKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDPTNAVGSFQISVGRAGTTNKTVKVPKNFTLKAPGPGYTCGPAKVVRPTQFIQPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVPCPTCACGCQSNSSQSGSCIDRNTPHLASVVAGSGKNNFQPLVQCTSHMCPIRIHWHVKLNYKEYWRVKVTITNFNYRMNYSDWNLVVQHPNFDNLTQLFSFNYKSLNPYGSINDTAMLWGVKFYNDFLNYAGPSGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNTGSRQEVSMFALVMASLVVLVFYAHV 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00240 446 PIRSF COBRA 3 446 IPR006918 GO:0010215|GO:0031225
Car03g00240 446 Pfam COBRA-like protein 51 214 IPR006918 GO:0010215|GO:0031225
Car03g00240 446 PANTHER PROTEIN COBRA 1 445 IPR006918 GO:0010215|GO:0031225
Car03g00240 446 PANTHER COBRA-LIKE PROTEIN 1 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00240 Car-Chr3 5723560 5727466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00240 1 446 COBRA Gene Family AT3G02210 74.393 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00240 - - gmx:100783820 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00240 03 5723560 5727466 Car03g00240 03 5723560 5727466 ECH
Car02g00271 02 2754749 2760193 Car03g00240 03 5723560 5727466 ECH
Car02g00272 02 2760961 2763926 Car03g00240 03 5723560 5727466 PCT
Car03g00240 03 5723560 5727466 Car02g00271 02 2754749 2760193 PCT