Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00214 ATGGCATTCTTCGGTAGAATTGGAAAACTACTCCGAAATTCTGCTGTCAAGCACATCAATCATGATGTATCTATGTCTACTCCTTCGGTATTCCAAGCAATTAGATCAATGTCATCTGCAAAACTCTTTGTTGGAGGTATTTCATATAACACTGATGATAGTAGTCTTCAACAACATTTTTCTCGCTACGGAGAAGTACTTGATGCAAAGGTCATCATGGATCGTGAAACAGGCAGGTCCAGAGGTTTCGCTTTCATAACTTTTGCAACAAGCGAGGATGCATCTTCTGCCCTTCAGGCCATGGATGGCCAGGATCTTGATGGTCGGAGGATACGGGTGAACTATGCTACAGAAAGGTCGCGTCCTGGGTTtggtggtggaggtggcggctatggcggcggcggcggatatggaggtggctatggaggtggaggtggctatgggggtggtggctttggcggtggtggttatggtggtagtACATATGGACGTAATGATAATAACAGGGGTGGAAGCTATGGTGCCCCAAGCAGCTATGGTGGTGGCAATGCTGAGACTAGTTACCCTGGTGGTGGCGGTGCTGCTAATTACCAATTCAATGAAAATTCTGGTGATGTTGCCTCTGCTAGTGGTGAACTCAGCAGCAACTCTAGTTTGGGTTATGGTGGCCAACTTGGAAGCAACCAAGATGATGGAATCGGCGCAGATAAGGATGAATTCATTGAGCCACTTGAAGACAACCATGTGACGGAGAAGGAGAACAACGATGAACCCAATGACTACGCTCAGACCCGGTGA 798 0.3947 MAFFGRIGKLLRNSAVKHINHDVSMSTPSVFQAIRSMSSAKLFVGGISYNTDDSSLQQHFSRYGEVLDAKVIMDRETGRSRGFAFITFATSEDASSALQAMDGQDLDGRRIRVNYATERSRPGFGGGGGGYGGGGGYGGGYGGGGGYGGGGFGGGGYGGSTYGRNDNNRGGSYGAPSSYGGGNAETSYPGGGGAANYQFNENSGDVASASGELSSNSSLGYGGQLGSNQDDGIGADKDEFIEPLEDNHVTEKENNDEPNDYAQTR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00214 265 MobiDBLite consensus disorder prediction 202 225 - -
Car03g00214 265 SUPERFAMILY RNA-binding domain, RBD 24 150 IPR035979 GO:0003676
Car03g00214 265 PRINTS Eggshell protein signature 36 52 - -
Car03g00214 265 PRINTS Eggshell protein signature 127 142 - -
Car03g00214 265 PRINTS Eggshell protein signature 152 162 - -
Car03g00214 265 PRINTS Eggshell protein signature 180 198 - -
Car03g00214 265 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 265 - -
Car03g00214 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Car03g00214 265 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 265 - -
Car03g00214 265 MobiDBLite consensus disorder prediction 202 265 - -
Car03g00214 265 SMART rrm1_1 41 114 IPR000504 GO:0003723
Car03g00214 265 SMART rrm2_1 41 114 IPR003954 GO:0003676
Car03g00214 265 MobiDBLite consensus disorder prediction 232 259 - -
Car03g00214 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Car03g00214 265 Gene3D - 15 138 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00214 Car-Chr3 4758788 4762354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00214 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 30.769 1.56e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00214 K12741 - gmx:100807155 289.656