LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car03g00179	ATGGGGTTGAAATTCTCAAAGCAGGAACCGCCACCCAAAATGAATAGTCCAAGTTTGGAATTGCATCATCGCATGATCAGTTATCTTACCAAGAATTTTATACGTAACTTGGTATCCAAGCAAAGGAGAAGAATGCTTATTGCTGGTTATGATCTTGATATGTCATATATCACAGATAGAGTGTTAGCTATGTCATTTCCTGCAGAACGTATGAGAGCAATGTATAGAAATCCTCTCTGGCAGGTTAAATCTGTGTTGGATATGAGACATCAAGAACATTATAAGGTCTATAATCTCTGTATAGAAGAGAATTATGATCCAGCACAATTCTATGGTCGTGTCGAAGCATACCCTTTTGATGACAATCATGTTCCATCTCTTGAAATGGTCAAAGCTTTCTGTGAAAGTGTGGATTCATGGCTGTCACGTGACCCCAAAAATATTGCTGTTATTCATTGCATGGCAGGTAAAGGTAGAACTGGTTTGATGGTTAGTTCATACCTAACTTATTGCGGCATGTCAGCAGAAGAGGCTCTTCAATTATATGCAGATAGAAGGACAACCAATAATGAAGGAGTATCAATACCAAGCCAACGTCGTTATGTAGGGTACTGGGAAAGTCTACTTTCTGTCCCTAGAGGAACTGGATATGGATCGCCGAACGTGAATTTGCCTCAACAATGTAGCAGAGAATTACGGCGAATTCGGCTGTATGATACTGTCAACATTGACACTATTTTCTTTGTTATATCAGAACTGCAGGAGATTCCAAATGAGGTGTATCGTCCAGCAGTGGAAATTTACAGGAGCTGCTGCAGAGAGGTTAAGAAAGGTTATCAGAGAACTAACAGCCCTCGCTATTATATTTCTATTCCTGAAAGTGATGAAGATGGAATACAATCAGAAATAGAAGAGCGGCAAGAGCCTCGTGTTGTAGTTCAAATGGACACAGAGAGTCCTGCAATATACCAGAAATCTTGTTTGGACCATTATTTTGATAAACCTATACAGGTAACTGGAGATGTACGTGTGATATTCTATGAGAAAATGATTGGAGGCCGTCTTTTCTACTGCTGTTTTAATACATCTTTTATTAGGAACAGCTTACTACAGCTCACAGTAAAGGACTTGGACAAAGTAGGGAAGAAAGGAAAATCAATATGTGGCCCGACATTCGGCTTAGAATTACTGTTTGGTCCTGCTAATACAGGATTTTCCTCCTCAAGTATATCTATCAGTGACAATTCTAGTGATGATTCACTATAA	1266	0.3926	MGLKFSKQEPPPKMNSPSLELHHRMISYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQEHYKVYNLCIEENYDPAQFYGRVEAYPFDDNHVPSLEMVKAFCESVDSWLSRDPKNIAVIHCMAGKGRTGLMVSSYLTYCGMSAEEALQLYADRRTTNNEGVSIPSQRRYVGYWESLLSVPRGTGYGSPNVNLPQQCSRELRRIRLYDTVNIDTIFFVISELQEIPNEVYRPAVEIYRSCCREVKKGYQRTNSPRYYISIPESDEDGIQSEIEERQEPRVVVQMDTESPAIYQKSCLDHYFDKPIQVTGDVRVIFYEKMIGGRLFYCCFNTSFIRNSLLQLTVKDLDKVGKKGKSICGPTFGLELLFGPANTGFSSSSISISDNSSDDSL	421

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car03g00179	421	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	308	400	IPR035892	-
	Car03g00179	421	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	49	209	IPR029021	-
	Car03g00179	421	Pfam	Tyrosine phosphatase family	131	183	IPR026893	GO:0004721
	Car03g00179	421	CDD	PTP_PTEN	53	208	IPR045101	GO:0016791
	Car03g00179	421	PANTHER	BNAC03G16750D PROTEIN	1	403	-	-
	Car03g00179	421	SMART	PTEN_C2_2	225	400	IPR014020	-
	Car03g00179	421	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	131	186	IPR000387	GO:0016311\|GO:0016791
	Car03g00179	421	Pfam	C2 domain of PTEN tumour-suppressor protein	321	398	IPR014020	-
	Car03g00179	421	ProSiteProfiles	C2 tensin-type domain profile.	243	401	IPR014020	-
	Car03g00179	421	Gene3D	-	263	403	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car03g00179	Car-Chr3	4022631	4029957	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car03g00179	1	405	Protein tyrosine phosphatase (PTP) family	AT5G39400	67.241	0.0	573

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car03g00179	K01110		-	gmx:100809938	702.975

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