Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00170 ATGGATGGACCAGCTGGCAGAGGTGGTTCAGGTGCAGACTTGTTTTTACCAAATTATAAATTGGGAAAAACACTTGGTATTGGATCCTTTGGCAAGGTAAAAATTGCTGAGCATGTATTGACTGGTCATAAGGTTGCCGTCAAGATCCTTAACCGTCGCAAGATAAAGAACCAGGAAATGGAAGAAAAAGTGAGAAGAGAAATAAAAATTTTAAGATTGTTCATGCATCCTCACATTATAAGACTGTATGAGGTCATAGAAACTCCAACTGACATATTTGTTGTCATGGAGTATGTGAAGTCTGGGGAGCTATTTGATTACATTGTAGAAAAGGGTAGGTTGCAAGAAGATGAAGCTCGTAATTTTTTTCAGCAGATAATATCTGGTGTTGAGTACTGTCACCGGAATATGGTTGTTCATAGAGACCTGAAGCCTGAAAATTTGCTTTTGGACTCTAAGTACAATGTCAAGATCGCTGATTTTGGATTAAGCAACATAATGCGTGATGGGCACTTTCTGAAGACCAGTTGTGGAAGCCCCAACTATGCAGCTCCTGAGGTTATCTCTGGGAAACTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTTTGTGGAACTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATTAAGGGAGGAATATACACTCTTCCTAGTCATTTGTCACCGGGTGCTAGAGATTTAATACCAAGGATGCTTGTGGTTGACCCAATGAAGAGGATGACCATACCTGAGATCCGCCAACATCCGTGGTTCCAAGCCCGTCTTCCGCGTTATTTAGCTGTGCCGCCCCCCGATACAATGCAACAGGCTAAAAAGATTGATGAGGAAATCCTTCAGGAAGTGGTGAATATGGGATTTGACAGGAATCAATTGATTGAGTCTCTTCGCAACAGGATACAAAATGAGGGTACTGTGGCGTACTATTTATTATTGGACAACCGATTCCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTATCAAGAGTCCATGGACTCTACTTTTAACCAAATGCACCCCAGTGAAGTTGCTTCTTCAGTTGTTGGACATCGTTTTCCAGGCTATATGGATTATCCAGGAGCAGGATTGAGACCACTCCCTGTTGAAAGAAAATGGGCTCTTGGGCTTCAGTCTCGAGCTCATCCTCGTGAGATCATGACTGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTTTGTTGGAAGAAAATTGGGCACTACAACATGAAGTGCAGCATTATTGAGAACGAGGCTGTTTCTAGTTCAAATGTGGTCAAATTTGAAGTGCAGCTTTACAAAACTCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCATGGTCCGCAGTTTCTTTTCTTGGATCTATGTGCTGCTTTCCTTGCACAGCTTCGTGTCCTCTAA 1458 0.4204 MDGPAGRGGSGADLFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAVKILNRRKIKNQEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIFVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEEILQEVVNMGFDRNQLIESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEYQESMDSTFNQMHPSEVASSVVGHRFPGYMDYPGAGLRPLPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCSIIENEAVSSSNVVKFEVQLYKTREEKYLLDLQRVHGPQFLFLDLCAAFLAQLRVL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00170 485 CDD AMPKA_C 388 482 - -
Car03g00170 485 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 431 484 - -
Car03g00170 485 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 432 - -
Car03g00170 485 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Car03g00170 485 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Car03g00170 485 Gene3D Transferase(Phosphotransferase) domain 1 11 353 - -
Car03g00170 485 SUPERFAMILY Protein kinase-like (PK-like) 16 288 IPR011009 -
Car03g00170 485 Gene3D Kinase associated domain 1, KA1 394 483 - -
Car03g00170 485 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00170 485 SUPERFAMILY KA1-like 328 484 IPR028375 -
Car03g00170 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Car03g00170 485 PANTHER SERINE/THREONINE KINASE 8 432 - -
Car03g00170 485 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 436 484 IPR001772 -
Car03g00170 485 PANTHER SERINE/THREONINE KINASE 431 484 - -
Car03g00170 485 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515
Car03g00170 485 CDD STKc_AMPK_alpha 16 271 - -
Car03g00170 485 CDD UBA_SnRK1_plant 293 333 - -
Car03g00170 485 SMART uba_6 294 331 IPR015940 -
Car03g00170 485 Pfam Kinase associated domain 1 442 484 IPR001772 -
Car03g00170 485 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00170 485 Pfam UBA/TS-N domain 293 329 IPR015940 -
Car03g00170 485 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00170 Car-Chr3 3878631 3883907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00170 19 272 CBL-interacting serine-threonine protein kinases AT2G26980 52.918 8.57e-94 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Car03g00170 Pkinase 2.7e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00170 K07198 - gmx:100796687 906.746