Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00161 ATGCAAGCATCATGTCTTGTGGAAGGTTCATCATCAGGTGTGAGGAAAGGTGCATGGAGTCAATTTGAAGATGAGCTTCTCAAAGATTGTGTCCAACGTTTTGGGGAGGGAAAATGGCACTTAGTTCCTGAAAGAGCAGGATTGAAAAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAATTATCTAAAACCAAATATCAAGAGGGGAGAATTTAGTGAAGATGAAGTTGATTTGATGATTAAATTACACAAACTTTTGGGAAACAGATGGTCACTTATTGCAGGAAGACTTCCAGGAAGAACTTCAAACGATGTGAAAAATTATTGGAACACAAACATGCGTAACAAAATACATTCTCAAGAGAAAGACAAGACCATTATGAAGGAAGTAATTGAAACAATGAAACCTAATGAAGTAATAAAGCCTCAACCACGAACTTTCTCAAAAAAATTGTTGGAAGGAAATAAATTTATTGATTTAGATGATAATTGTTCCAAAAATGGTATTAATGAAGTAGGTGCTACTTCATTGGAAGCAAATAATTGGTGGGATACTTTGTTTGAAGAGGAAAAAGATAATAATTATTCATGGGGTAATGGGTTTCTTCAAACTGGCTTTTGGGATGAAGAGCTTAATTCAATTACAACAAATCCTTTTGACTTGCTTAATGAAAGTCAAATTTGGAGTGAATTTCTTTCTCAAACTTGA 711 0.346 MQASCLVEGSSSGVRKGAWSQFEDELLKDCVQRFGEGKWHLVPERAGLKRCRKSCRLRWLNYLKPNIKRGEFSEDEVDLMIKLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNMRNKIHSQEKDKTIMKEVIETMKPNEVIKPQPRTFSKKLLEGNKFIDLDDNCSKNGINEVGATSLEANNWWDTLFEEEKDNNYSWGNGFLQTGFWDEELNSITTNPFDLLNESQIWSEFLSQT 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00161 236 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Car03g00161 236 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Car03g00161 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Car03g00161 236 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Car03g00161 236 Gene3D - 70 139 - -
Car03g00161 236 SMART sant 68 116 IPR001005 -
Car03g00161 236 SMART sant 15 65 IPR001005 -
Car03g00161 236 Gene3D - 16 68 - -
Car03g00161 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Car03g00161 236 CDD SANT 71 114 IPR001005 -
Car03g00161 236 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Car03g00161 236 CDD SANT 18 63 IPR001005 -
Car03g00161 236 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 13 172 - -
Car03g00161 236 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 13 172 - -
Car03g00161 236 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00161 Car-Chr3 3625610 3627659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00161 10 236 MYB Transcription Factor Family AT1G66370 43.922 1.67e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g00161 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00161 - K16166 gmx:100778957 279.256