Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00159 ATGGGGAGATCACCATGTTGTGACAAAGTTGGTTTAAAGAAAGGACCATGGACACCAGAGGAAGATCAAAAACTGTTAGCTTACATTGAAGAAAATGGTCATGGAAGTTGGCGTGCTTTACCTTCAAAAGCTGGACTTGAGAGGTGTGGTAAGAGTTGTAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAATTCAGTTTGCAAGAAGAACAAACTATTATTCAACTTCATGCACTTTTAGGCAACAGGTGGTCATCAATAGCCACACATTTGCCTAAAAGAACAGATAATGAGATCAAGAACTATTGGAACACACATCTAAAGAAAAAGTTAACAAAATTGGGAATTGATCCTGTCACACACAAATCCAAAAATGAATCCATTTTCTCTGATGGACATTCCAAAAGTGCTGCAAACCTTAGTCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCTGAAGCAAGATTGGTCAAAGAATCAAAGATACATACAAAACATTCATTGCAACATCAGCTTGGAATAATTAATTCTGTTTTTCCATCACAATCTTCATCATCTGCATCGTCTTCTTCAAATCAAGTACTTCACATTAAGCCAGATACTATACCCTCAGGTTCTTTAGATGCAATGAAGGCTTGGTTAAAATCTAATGAAGGAAATAATGGTAGTGATCTTGAGTCTCCTACATCTTCTCTATCATTTTGTGAGAAAGGAATTGTGAAAGATGAAGGTGAGAAAGAATGGAAAGGTTATGAAAATTCAACAAATTTGGAAGAATACAAAGATGGTATGGAGAATTCAATGGCTTTTCCTTCTACCATGCATCATGAACTGACAATGATCACATGGGGTTCTTCTGATGATAATGCACATGTTAGTGTTGCTGATGAAGCTGGTTTCACTAATCTTTTGCTTAATAGTTCTAACTCCGGTGACCGGAGTTTGTCCCCGGAGAGTGGTGGAGAGTGTAATACTTGCTATGGAAGTGGAGGTGAATTCTGTGAAGATAACAAAAACTACTGGAATGACATTCTTAATTTAGTGAATTCTTCACCTTCTGATTCGTCCGTTTTTTGA 1095 0.3735 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEENGHGSWRALPSKAGLERCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSSIATHLPKRTDNEIKNYWNTHLKKKLTKLGIDPVTHKSKNESIFSDGHSKSAANLSHMAQWESARLEAEARLVKESKIHTKHSLQHQLGIINSVFPSQSSSSASSSSNQVLHIKPDTIPSGSLDAMKAWLKSNEGNNGSDLESPTSSLSFCEKGIVKDEGEKEWKGYENSTNLEEYKDGMENSMAFPSTMHHELTMITWGSSDDNAHVSVADEAGFTNLLLNSSNSGDRSLSPESGGECNTCYGSGGEFCEDNKNYWNDILNLVNSSPSDSSVF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00159 364 CDD SANT 69 112 IPR001005 -
Car03g00159 364 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 360 - -
Car03g00159 364 CDD SANT 16 61 IPR001005 -
Car03g00159 364 SMART sant 13 63 IPR001005 -
Car03g00159 364 SMART sant 66 114 IPR001005 -
Car03g00159 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car03g00159 364 Gene3D - 69 116 - -
Car03g00159 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car03g00159 364 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car03g00159 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 360 - -
Car03g00159 364 Gene3D - 13 66 - -
Car03g00159 364 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car03g00159 364 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car03g00159 364 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car03g00159 364 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00159 Car-Chr3 3533435 3536524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00159 1 364 MYB Transcription Factor Family AT3G01140 55.200 1.46e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g00159 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00159 K09422 - gmx:100794047 456.447