Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00153 ATGTCAACATCAAACCAACACCAGTTCCGTTACACACAAACCCCATCCAAAGTTCTTCACCTTCGCAACCTTCCTTGGGAGTGTTCCGAAGAAGAACTCATTGAACTTTGCAATCCCTTCGGTAAAATCGTCAACACTAAATGCAATGTCGGCGCCAATCGCAACCAAGCCTTTGTCGAATTCGTGGATCTAAATCAAGCAATTTCAATGGTTTCATATTATGCTTCATCTTCCGAGCCTGCTCAGGTTCGTGGTAAAACTGTTTACATACAGTATTCCAATAGACACGAAATTGTCAACAACAAAAGCCCTGGAGATATTCCTGGAAATGTCTTGCTGGTAACTATTGAAGGTGTGGAAGCTGGGGATGTGAGCATTGATGTTATCCACTTGGTGTTTTCTGCTTTTGGTTTTGTTCACAAAATTGCTACCTTTGAAAAGACAGCAGGTTTCCAGGCTCTGATTCAGTTCACTGATGCCGAGACTGCTTCTTCAGCTAGGGAAGCACTGGATGGAAGAAGCATACCAAGATACCTGCTTCCAGATCATGTTGGTTCTTGTAATTTGCGCATTTCATACTCGGCACATAGAGATCTGAATATCAAATTTCAATCTAATCGCAGCAGGGACTATACAAATCCTATGCTCCCTGTCAATCATAGTGCTATGGAGGGGGCAGCACAGCCTACTATAGGTCCTGATGGGAAGAGGAGAGAACCGGAGAGCAATGTACTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACTGTTGACGTCATCAACACGGTGTTCTCTGCATTTGGTACCATCCAGAAAATTGCTATGTTCGAAAAGAATGGTCAAACTCAGGCACTAATTCAGTACCCTGATGTTGTAACGGCAGCAGCTGCTAGAGAAGCTTTAGAGGGACATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTTCAGTGACAAAAGTCGGGACTACACAGTGCCACATCCTAGTTTGGTTGCAGCACAAGTTCCTGCAACAGCTTGGCAAAATCCTCAGGCTGCACCTATGTACCATGCCGGTGCCCCTGCTTTTCAGACTCAAGTTCCTGGAGGACAAGTGCCGTCATGGGATCCAAATCTGCAGTCAGTTAGACCGAGTTACATATCTGTTCCCGGTGCTTATCCTGTTCAAACTGGTGCAGTTCCTCCTATGCCTGCCTATGCATCAACAGGTATGCCGACCACTTCCTCTCCTCTTTCTCAAAGCAGCCCTAATCCAATTGGAATCAGCCATCCTGGGGCTCCTGGTTCGTCACCTGTGAGACCTGGTGGGGCTTCACCAGGTCAGCATTATTATGGTTAG 1380 0.4529 MSTSNQHQFRYTQTPSKVLHLRNLPWECSEEELIELCNPFGKIVNTKCNVGANRNQAFVEFVDLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSAREALDGRSIPRYLLPDHVGSCNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNHSAMEGAAQPTIGPDGKRREPESNVLLASIENMQYAVTVDVINTVFSAFGTIQKIAMFEKNGQTQALIQYPDVVTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPHPSLVAAQVPATAWQNPQAAPMYHAGAPAFQTQVPGGQVPSWDPNLQSVRPSYISVPGAYPVQTGAVPPMPAYASTGMPTTSSPLSQSSPNPIGISHPGAPGSSPVRPGGASPGQHYYG 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00153 459 PANTHER OS02G0789700 PROTEIN 2 435 - -
Car03g00153 459 SMART rrm1_1 18 91 IPR000504 GO:0003723
Car03g00153 459 SMART rrm1_1 246 316 IPR000504 GO:0003723
Car03g00153 459 Pfam RRM-like domain 242 320 IPR021790 -
Car03g00153 459 SUPERFAMILY RNA-binding domain, RBD 248 341 IPR035979 GO:0003676
Car03g00153 459 MobiDBLite consensus disorder prediction 415 434 - -
Car03g00153 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Car03g00153 459 CDD RRM3_PTBPH1_PTBPH2 242 338 IPR034794 -
Car03g00153 459 CDD RRM2_PTBPH1_PTBPH2 109 203 IPR034793 -
Car03g00153 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 70 IPR000504 GO:0003723
Car03g00153 459 Gene3D - 109 221 IPR012677 -
Car03g00153 459 Gene3D - 241 344 IPR012677 -
Car03g00153 459 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 2 435 - -
Car03g00153 459 Gene3D - 3 105 IPR012677 -
Car03g00153 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 196 IPR000504 GO:0003723
Car03g00153 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 175 - -
Car03g00153 459 CDD RRM1_PTBPH1_PTBPH2 15 95 IPR034792 -
Car03g00153 459 SUPERFAMILY RNA-binding domain, RBD 112 209 IPR035979 GO:0003676
Car03g00153 459 MobiDBLite consensus disorder prediction 411 459 - -
Car03g00153 459 SUPERFAMILY RNA-binding domain, RBD 5 106 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00153 Car-Chr3 3353032 3360384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00153 212 308 Eukaryotic Initiation Factors Gene Family AT3G16380 26.471 1.08e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00153 K14948 - gmx:100792308 810.061