Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00152 ATGTCTCTTCTTGGATTTATTCTTCTTGGAATTTTTCTATACAAAGTTTCACATGTAAAAGGACATGGTGGTCATGTGAGTTGGATTAATGCTCATGCTACTTTCTATGGTGGAAGTGATGCTTCTGGTACAATGGGTGGAGCTTGTGGATATGGAAACCTATATAGCCAAGGTTATGGAACAAATACAGCAGCATTGAGCACTGCACTTTTCAACAATGGATTAAGCTGTGGTGCATGTTATGAAATTAAATGTGTGAATGATCCACAATGGTGTATTGCTGGTAGCTCCATTGTAGTTACTGCCACTAATTTTTGTCCACCTGGTGGTTGGTGTGACCCTCCAAATCACCATTTTGATCTTTCTCAACCTATTTTTCAACAAATTGCTCAATATAAGGCAGGGATTGTGCCTGTTGCTTATAGAAGGGTAAGATGCAGGAGAAAAGGTGGAATAAGATTCACAATCAATGGTCATTCTTACTTCAATTTAGTACTTGTTACTAATGTTGGAGGTGCTGGTGATGTACATTCTGTGGCCATCAAAGGTTCAAGATCTAGATGGCAAGCCATGTCAAGGAATTGGGGGCAAAATTGGCAAAGTAACTCTTACCTTAATGGACAAAGTCTTTCCTTTGTAGTCACCACAAGTAATGGTCATAGTGTGGTCTCATTCAATGCTGCCCCATCTAGTTGGTCCTTTGGGCAAACATACACCGGAAGACAGTTCAACTATTAA 738 0.3984 MSLLGFILLGIFLYKVSHVKGHGGHVSWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDPQWCIAGSSIVVTATNFCPPGGWCDPPNHHFDLSQPIFQQIAQYKAGIVPVAYRRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRSRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSFNAAPSSWSFGQTYTGRQFNY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00152 245 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Car03g00152 245 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Car03g00152 245 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Car03g00152 245 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Car03g00152 245 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Car03g00152 245 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Car03g00152 245 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Car03g00152 245 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Car03g00152 245 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Car03g00152 245 PRINTS Expansin signature 109 126 IPR002963 GO:0009664
Car03g00152 245 PRINTS Expansin signature 126 139 IPR002963 GO:0009664
Car03g00152 245 PRINTS Expansin signature 150 162 IPR002963 GO:0009664
Car03g00152 245 PRINTS Expansin signature 162 183 IPR002963 GO:0009664
Car03g00152 245 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Car03g00152 245 PRINTS Expansin signature 226 242 IPR002963 GO:0009664
Car03g00152 245 SMART dpbb_1 63 141 IPR007112 -
Car03g00152 245 SUPERFAMILY Barwin-like endoglucanases 27 169 IPR036908 -
Car03g00152 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
Car03g00152 245 PANTHER EXPANSIN-A15 6 244 IPR002963 GO:0009664
Car03g00152 245 SUPERFAMILY PHL pollen allergen 148 240 IPR036749 -
Car03g00152 245 PANTHER EXPANSIN 6 244 - -
Car03g00152 245 Gene3D - 151 243 IPR036749 -
Car03g00152 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Car03g00152 245 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Car03g00152 245 Pfam Lytic transglycolase 63 141 IPR009009 -
Car03g00152 245 Gene3D - 17 147 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00152 Car-Chr3 3334616 3337247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00152 28 245 Expansin Gene Family AT3G29030 84.862 1.96e-141 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00152 - K20628 gmx:100790170 448.743