Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00134 ATGGACAGAAGAACACACAGTTTGGTCAATGCTACAAATGACTTTCAAAACCACATAACACAAAAGCAATCACTGTATCCTTCTGGTTTTCCAAGAAAGGTACTTGCAGAGGTTATAGGGACATATTTGTTGGTGTTTGTTGGGAGTGGGAGTGCAGCTATGAATGCAATTGATGAAAACAAAGTATCAAAATTGGGAGCATCAATGGCAGGTGGATTCATAGTTACAGTTATGATTTATGCAATTGGACATATCTCTGGTGCACACATGAATCCTGCTGTTTCCTTAGCTTTTGCCACCGTTAGCCATTTTCCTTGGAAACAGGTACCATTTTACATTGCAGCTCAACTCACAGGAGCAATTTCAGCTTCATATACATTGAAAGTTTTGCTAGAGCCATCAAAGCAACTTGGTGCAACATCACCTTCTGGATCTAACATTCAAGCATTAATCATAGAAATTGTGACCACCTTCACCATGGTGCTCATCTCCACCGCCGTCTCCACCGACCCAAAAGCTATAGGAGAGCTTTCAGGAGTTGCAGTTGGTTCATCTGTTTGCATAGCAAGCATTGTGGCTGGACCAATATCGGGGGGGTCAATGAACCCAGCAAGGACATTAGGTCCAGCAATTGCTACTTCATCCTACAAAGGAATTTGGGTTTATATGGTTGGACCAATTACTGGTGCACTTTTAGGTACATGGTCTTATGTTGTGATTCAGGAGACAAATAAACAAGCTCTTACAACTTCACTCAAGCTACACCATGAGATGAAAGGGATTGAGTTAGTTGGTGACAAGGACAATCAATGTTCAGTGTGA 822 0.4173 MDRRTHSLVNATNDFQNHITQKQSLYPSGFPRKVLAEVIGTYLLVFVGSGSAAMNAIDENKVSKLGASMAGGFIVTVMIYAIGHISGAHMNPAVSLAFATVSHFPWKQVPFYIAAQLTGAISASYTLKVLLEPSKQLGATSPSGSNIQALIIEIVTTFTMVLISTAVSTDPKAIGELSGVAVGSSVCIASIVAGPISGGSMNPARTLGPAIATSSYKGIWVYMVGPITGALLGTWSYVVIQETNKQALTTSLKLHHEMKGIELVGDKDNQCSV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00134 273 CDD MIP 32 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g00134 273 Pfam Major intrinsic protein 30 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g00134 273 PANTHER AQUAPORIN NIP2-1 17 263 IPR034294 -
Car03g00134 273 PRINTS Major intrinsic protein family signature 32 51 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g00134 273 PRINTS Major intrinsic protein family signature 71 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g00134 273 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g00134 273 PRINTS Major intrinsic protein family signature 152 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g00134 273 PRINTS Major intrinsic protein family signature 183 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g00134 273 PRINTS Major intrinsic protein family signature 220 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g00134 273 SUPERFAMILY Aquaporin-like 25 246 IPR023271 -
Car03g00134 273 ProSitePatterns MIP family signature. 89 97 IPR022357 -
Car03g00134 273 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 17 263 - -
Car03g00134 273 Gene3D Glycerol uptake facilitator protein. 2 252 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00134 Car-Chr3 2939653 2944412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00134 32 269 Major Intrinsic Protein MIP AT5G37820 45.643 8.18e-69 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00134 K09874 - gmx:100795261 348.977