Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00128 ATGAACATGGAAGATCACATCAATAAATCACAACACCAAGTTGAAATCCCTATAGAAAAATTGAGTGCATCTCTTAAAGGTGCAAAGTTTAAGAAGGCTATGATTGATGATAATGAGAAAGTATGTGAAGAACAAGTTGAAAAAAATGAAGAGAAAGGAGAATGTCGATATTGTCATGAGGAGGAATTTGTTTCTAAACTTGAAGCACCATGTAATTGTGATGGAAGCTTAAAGTATGCTCACAGAAAATGCGTGGCCCATTGGTGCAACATCAAACGCAACACAATATGTGAGATATGCAAGCAGGCTTACTTTCCAAATTATTCAGTGAAGGGGCCTCCTCCTTATGATGACGAAATACTCATGAGTGAAAGATGGGCAATTCCGGGGACAAACATTAGAATGGTGTCACCACTGCAGCAGACGGAGCGTAGCATGAATCGCCTTATTCGATCAATGAATTCCGACTTCACATTGAGAAATCCCACCGGAGGCGTCATTTTCGGAACATTACTCTTTGTGTTTGTTGTATTGTTGGTTATAAGGGATGCATACTACTATACACCACCCAAGGAGGACAAAATTTCTCACATTATGTACATTGCTGTGGTGATTCTCATTGTGCCGGCCTATATTTTATCATGGATTTTGGAATGCAGaaCTCAGAGATAG 672 0.3943 MNMEDHINKSQHQVEIPIEKLSASLKGAKFKKAMIDDNEKVCEEQVEKNEEKGECRYCHEEEFVSKLEAPCNCDGSLKYAHRKCVAHWCNIKRNTICEICKQAYFPNYSVKGPPPYDDEILMSERWAIPGTNIRMVSPLQQTERSMNRLIRSMNSDFTLRNPTGGVIFGTLLFVFVVLLVIRDAYYYTPPKEDKISHIMYIAVVILIVPAYILSWILECRTQR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00128 223 SMART ringv_2 54 101 IPR011016 GO:0008270
Car03g00128 223 Pfam RING-variant domain 55 100 IPR011016 GO:0008270
Car03g00128 223 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 3 221 IPR033275 -
Car03g00128 223 CDD RING_CH-C4HC3_MARCH 55 101 - -
Car03g00128 223 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 221 - -
Car03g00128 223 ProSiteProfiles Zinc finger RING-CH-type profile. 47 107 IPR011016 GO:0008270
Car03g00128 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 113 IPR013083 -
Car03g00128 223 SUPERFAMILY RING/U-box 50 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00128 Car-Chr3 2791453 2794537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00128 43 177 C3H Transcription Factor Family AT5G05830 24.823 1.74e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00128 - - cam:101504331 426.017