Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00123 ATGAAGAGAGCTTCATCGATGAAGAACACACCACCAATAGTAATAGTAAATGAAAAGTATGGAGAATGTAAGAAAAATTTCTTGGTAAAAAGTGGAGGGTATTTAACTGATGGATGCATGGAGTTTATGGCAAGTAGGGCAGGAGGAACCAATGCTGCAATGACTTGTGATGCTTGTGGTTGTCACAGAAACTTCCATAAACAAGAATGGTACTTTGTTGAGGctacttcttcttcttcttcttcttcAACTCAACCACCTAAGGCTCCTTAA 273 0.3553 MKRASSMKNTPPIVIVNEKYGECKKNFLVKSGGYLTDGCMEFMASRAGGTNAAMTCDACGCHRNFHKQEWYFVEATSSSSSSSTQPPKAP 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00123 90 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 73 - -
Car03g00123 90 Pfam ZF-HD protein dimerisation region 18 69 IPR006456 -
Car03g00123 90 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 69 IPR006456 -
Car03g00123 90 PANTHER MINI ZINC FINGER PROTEIN 2 13 73 - -
Car03g00123 90 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00123 Car-Chr3 2676428 2676700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00123 13 69 Zinc finger-homeobox gene family AT3G28917 56.897 2.57e-19 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car03g00123 ZF-HD_dimer 3.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00123 - - cam:105851709 182.185