Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00122 ATGAAAAAAGCTTCATCAAGCAAGACCACAACACCAATAGTAAACATTAATGAAAAATATGGGCAATGTAAGAGAAATTTCTTGGTAAAGAGTGGAGGATATTTAATGGATGGATGCATGGAGTTTATGGTGAGTAGGGCAGGAGGTCCTAATGCTGAACTCACTTGTGATGCTTGTGGTTGTCATAGAAGCTTCCATAAGAAAGAGTGGCATTTCAGTGAAGCTGTTGTTTCTACTTCATCAGCTCAACCACCTAAGGCTCCTTGA 267 0.397 MKKASSSKTTTPIVNINEKYGQCKRNFLVKSGGYLMDGCMEFMVSRAGGPNAELTCDACGCHRSFHKKEWHFSEAVVSTSSAQPPKAP 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00122 88 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
Car03g00122 88 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 69 IPR006456 -
Car03g00122 88 PANTHER MINI ZINC FINGER PROTEIN 2 16 71 - -
Car03g00122 88 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 71 - -
Car03g00122 88 Pfam ZF-HD protein dimerisation region 18 69 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00122 Car-Chr3 2669568 2669921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00122 19 85 Zinc finger-homeobox gene family AT3G28917 51.471 1.60e-17 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car03g00122 ZF-HD_dimer 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00122 - - cam:105851709 146.747