Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00118 ATGAGTGCCGGCGAGTTAGCATGCATCTACTCCATCTTGATGCTCCACAATGACGGAATCGCAATCACCGCGGAGAAGATTAACACTATGTTGAAGGCTGCTGGCGCCACTGTCGAATCATACAGGCCAAGCTTATTCGCCAAACTTGCTCAGAATAAGAGCATTGACGATCTCctgcagctgccgcACCTGTCGCCGAGGCCAAGAAGGAAGAGGCAAAGGAAGAAAGTGACGATGACATGGGCTTTAAGCATTGACGATCTCGTTTTGAACgctggcgctgccggtggtgccgttgttgtcgtatctgctcctgccgctgctgctgctggtggagcagctgcagctgccgcacctgccgcCGAGGCCAAGAAGGAAGAGGCAAAGGAAGAAAGTGACGATGACATGGGCTTTAGTTTGTTTGATTAG 429 0.366 MSAGELACIYSILMLHNDGIAITAEKINTMLKAAGATVESYRPSLFAKLAQNKSIDDLLQLPHLSPRPRRKRQRKKVTMTWALSIDDLVLNAGAAGGAVVVVSAPAAAAAGGAAAAAAPAAEAKKEEAKEESDDDMGFSLFD 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00118 142 MobiDBLite consensus disorder prediction 119 142 - -
Car03g00118 142 Pfam 60s Acidic ribosomal protein 84 141 - -
Car03g00118 142 Pfam 60s Acidic ribosomal protein 22 60 - -
Car03g00118 142 CDD Ribosomal_P1 5 59 - -
Car03g00118 142 MobiDBLite consensus disorder prediction 122 136 - -
Car03g00118 142 Hamap 50S ribosomal protein L12 [rpl12]. 6 142 IPR027534 GO:0003735|GO:0005840|GO:0006414
Car03g00118 142 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 59 - -
Car03g00118 142 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 84 142 - -
Car03g00118 142 Gene3D - 1 60 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00118 Car-Chr3 2605059 2608574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00118 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 40.278 9.82e-26 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00118 K02942 - egt:105963624 96.6709