Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00117 ATGACGGAATCACAATCACCGTTAGCGGAGAAGATTAACACTATCTTGAAGGCTGCTGGGGTCACTGTCGAATCATACTGGCCAAGCTTATTCGCCAAACTTGCTCAGAATAAGAGCATTGACGATCTCGTTTTGAACgctggcgctgccggtggtgccgctgttgccgtatctgctcctgccgctgctgctggtggtggagccgctgcagctgccgcacctgctgTCGAGGCCAAGAAG 240 0.2917 MTESQSPLAEKINTILKAAGVTVESYWPSLFAKLAQNKSIDDLVLNAGAAGGAAVAVSAPAAAAGGGAAAAAAPAVEAKK 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00117 80 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 8 80 - -
Car03g00117 80 Pfam 60s Acidic ribosomal protein 7 79 - -
Car03g00117 80 Gene3D - 2 48 IPR038716 -
Car03g00117 80 CDD Ribosomal_P1 9 46 - -
Car03g00117 80 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 8 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00117 Car-Chr3 2589237 2589559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00117 9 63 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 58.182 3.04e-16 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00117 K02942 - sspl:121749073 65.0846