Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00116 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTTAAGAAAGGACCATGGACTCCTGAAGAAGATATCATACTTGTTACTTATATACAAGAACATGGTCCTGGAAATTGGAGGGCGGTTCCTACAAAGACAGGGTTGTCAAGATGTAGCAAAAGTTGTAGACTTAGATGGACTAATTACTTGAGGCCAGGAATCAAAAGGGGTAACTTCACTGAACAAGAAGAGAAGATGATTATCCATCTTCAAGATCTTTTAGGAAATAGATGGGCTGCAATAGCTTCATACCTTCCACAAAGAACAGATAATGACATAAAAAATTATTGGAACACTCATTTGAAAAAGAAGCTGAAGAAATTGCAAACAGATAATAATTCTGAAGGAAATTTTGAAGATGAAAAATTTTCATCATCATCATCACAAAGAATTCCAAGAGGTCAATGGGAAAGAAGGCTTCAAACAGATATTCAAATGGCTAAAAAAGCTCTTAGTGAAGCACTTTCACCACAAAAACCAATATCTTCAAATTTTTCATCATCAATGTCTTCAAATATTAAAGAACAACCTCATCAATCAATTTGCTATGCTTCAAGTGCTGACAACATAGCTCGTTTATTAAAGGGTTGGATGAAAAATCCACAAAAATCATCTAAAAGTTCTTTGACTCAAAATTCATTCAACAATTTTGTAGTTTCAGCAGGGACTGATACTGCTTCTAGTGGAACAAAGTGTGGTGAATATTTGTCTGAGACCTTTGAATCTTTGTTTGGTTTTGAGCCTTTGGAGTCTTTTGAGTCTTCAAATTCTGAATTCTCTCAATCTTTGTCACCTGATCATGCAAGTACTATTTTACAAGATGAGAGTAAGCCTGATCATATTGCTAATGAAATGCCATTTTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTAGTTGTCCTGACAAAAATAGTGTTAGGTTATGGTGA 963 0.3531 MGRPPCCDKEGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTDNNSEGNFEDEKFSSSSSQRIPRGQWERRLQTDIQMAKKALSEALSPQKPISSNFSSSMSSNIKEQPHQSICYASSADNIARLLKGWMKNPQKSSKSSLTQNSFNNFVVSAGTDTASSGTKCGEYLSETFESLFGFEPLESFESSNSEFSQSLSPDHASTILQDESKPDHIANEMPFSLLEKWLLDEASCPDKNSVRLW 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00116 320 Gene3D - 68 141 - -
Car03g00116 320 Gene3D - 13 66 - -
Car03g00116 320 SMART sant 13 63 IPR001005 -
Car03g00116 320 SMART sant 66 114 IPR001005 -
Car03g00116 320 CDD SANT 16 61 IPR001005 -
Car03g00116 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 315 - -
Car03g00116 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Car03g00116 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car03g00116 320 CDD SANT 69 111 IPR001005 -
Car03g00116 320 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 315 - -
Car03g00116 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car03g00116 320 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Car03g00116 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car03g00116 320 MobiDBLite consensus disorder prediction 122 143 - -
Car03g00116 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car03g00116 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00116 Car-Chr3 2497379 2500000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00116 1 310 MYB Transcription Factor Family AT5G62470 52.125 2.94e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g00116 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00116 K09422 - gmx:778080 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00192 02 1890408 1892245 Car03g00116 03 2497379 2500000 PCT