Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00113 ATGTCTAGCCGAAGGTCAAGGCAACAATCAGGAGGGTCTACAAGGATCTCTGATGATCAAATCATTGATCTTGTTTGCAAATTGCGTCAACTTGTTCCGGAGATTCGCAATAGACACCCTAACAAGGCACCAGCTTCTAAGGTACTACAAGAAACTTGCAACTATATTAGAAGCTTACAAAGAGAGGTTGAAGATTTAAGTCTTCGATTGTCTCAGTTGTTGGACACAATTGATGCTGATAGTGCTGAAGCTTCTATCATTAGGAGCCTACTTAACCAATGA 282 0.4078 MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRHPNKAPASKVLQETCNYIRSLQREVEDLSLRLSQLLDTIDADSAEASIIRSLLNQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00113 93 Coils Coil 56 76 - -
Car03g00113 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Car03g00113 93 Gene3D - 15 88 IPR036638 GO:0046983
Car03g00113 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Car03g00113 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Car03g00113 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 77 IPR036638 GO:0046983
Car03g00113 93 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00113 Car-Chr3 2400111 2402137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00113 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 67.500 4.21e-31 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g00113 HLH 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00113 - - gmx:100796852 132.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00184 02 1774397 1778310 Car03g00113 03 2400111 2402137 PCT