Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00103 ATGGGTTATCTGAGAAAAGCTTCCAAAACCTTAAAGCAATCAAATTATGTGTCATTGTTATTCAATTTCAATTTAACACATCAAAGATTTTCATTGAACCGTGCACTTTTCTGTACCCAATCACGCCAAAACAACACGAAAGAGAAACCCGTTATAGATTTGAGTCAGTACCCACCAGAGCTTGTGAGAAATTTCTCGATAATTGCTCATGTGGATCATGGAAAATCAACTCTTGCTGATCGCCTTTTGGAACTCACTGGAACTATTAAGAAAGGACTTGGCCAGCCTCAGTATCTTGATAAATTGCAGGTGGAGAGAGAAAGGGGAATAACAGTTAAAGCTCAGACAGCAACAATGTTCTATAAGAATATCATAAATGGTGACGATGGAAAAGAATCACCTAATTATTTGTTGAATCTTATTGACACTCCCGGGCATGTCGATTTCAGTTATGAAGTGTCAAGGTCACTAGCTGCTTGTCAGGGTGTGCTTTTGGTTGTTGATGCTGCTCAAGGAGTTCAAGCACAAACTGTTGCTAACTTTTACCTTGCCTTCGAGTCTAACTTATCGATTATACCCGTCATTAACAAGATAGACCAGCCAACAGCTGATCCAGACCGTGTTAAAGCCCAATTGAAATCGATGTTCGATCTTGACCCAAGTGATGCATTGCTAACATCGGCTAAAACTGGGAAAGGTCTTGAACAAGTTCTTCCAGCTGTTATAGAGCGCATACCTCCGCCTCATGGGAGAAGTGAATCTTCTTTACGTATGCTTTTACTTGATTCATATTATGATGAATACAAAGGGGTGATATGCCATGTTGCTGTCGTTGATGGTGCCCTGCGCAAGGGGGATAAGATTTCTTCGGCCGCGACTGGTAGATCATATGAAGCTTTGGATATAGGCATCATGCATCCTGAACTTACGTCTACCGGTGTCTTGCTTACTGGACAAGTTGGTTATGTTATAAGTGGCATGCGATCAACCAAAGAGGCACGTGTTGGCGACACAATTTACCATACACGGAGCGAAGGCCCTGTGGAACCTCTTCCAGGCTTCAAACCAGCAAAACACATGGTTTTCTCTGGTCTTTATCCAGCTGATGGATCCGATTTCGAAGCACTCAACCATGCAATAGAGAGGTTGACATGTAATGATGCCAGTGTCTCTGTTGCTAAAGAAACTAGCACTGCTCTTGGTCTAGGTTTCAGGTGTGGGTTTTTAGGCCTTCTGCACATGGATGTTTTTCATCAAAGACTTGAACAGGAATATGGAGCACATATTATCTCAACTGTTCCTACTGTGCCATACATATATGAGTATTCTGATGGAAGCAAATTAGAAGTTCAGAATCCTGCTTCGTTGCCGTCTAATCCCAAGCAACGAGTGGTAGCATGTTGGGAACCCACAGTAATAGCTACTATAGTTATTCCTAGTGAGTATGTTGGACCTGTTATCACTCTTGTCTCTGAGCGTAGGGGTCAGCAGTTGGAGCACTCTTTCATTGACAGTCAAAGGGCTTTCATGAAGTATCGTATTCCTTTGAGGGAAATTGTTGTTGACTTTTATAATGAATTGAAGAGTATAACATCAGGCTATGCATCATTTGATTATGAGGATTCAGATTACCAACCGTCTGATCTGGTGAAACTTGATATTCTCTTGAATGGACAACCAGTTGATGCAATGGCAACCATTGTTCATAACTCGAAAGCATATCGTGTCGGGCGTGAATTGGTGGAGAAATTGAAGAAAGTCATAGACAGGCAAATGTTCGAGATATCCATACAAGCCGCCATTGGGTCAAAAATTGTAGCAAGGGAGACTATTACTGCCATGAGAAAAAATGTTCTTGCCAAGTGTTATGGTGGTGATATTACGCGAAAAAGGAAGCTATTGGAGAAGCAAAAGGAAGGGAAAAAGCGAATGAAACGTGTTGGTTCTGTTGATATACCACAAGAAGCATTCCATGAACTATTGAAGGTTTCATAG 1995 0.4155 MGYLRKASKTLKQSNYVSLLFNFNLTHQRFSLNRALFCTQSRQNNTKEKPVIDLSQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGLGQPQYLDKLQVERERGITVKAQTATMFYKNIINGDDGKESPNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLSIIPVINKIDQPTADPDRVKAQLKSMFDLDPSDALLTSAKTGKGLEQVLPAVIERIPPPHGRSESSLRMLLLDSYYDEYKGVICHVAVVDGALRKGDKISSAATGRSYEALDIGIMHPELTSTGVLLTGQVGYVISGMRSTKEARVGDTIYHTRSEGPVEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSVAKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHIISTVPTVPYIYEYSDGSKLEVQNPASLPSNPKQRVVACWEPTVIATIVIPSEYVGPVITLVSERRGQQLEHSFIDSQRAFMKYRIPLREIVVDFYNELKSITSGYASFDYEDSDYQPSDLVKLDILLNGQPVDAMATIVHNSKAYRVGRELVEKLKKVIDRQMFEISIQAAIGSKIVARETITAMRKNVLAKCYGGDITRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00103 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 270 IPR027417 -
Car03g00103 664 SUPERFAMILY EF-G C-terminal domain-like 468 562 IPR035647 -
Car03g00103 664 TIGRFAM small_GTP: small GTP-binding protein domain 66 237 IPR005225 GO:0005525
Car03g00103 664 SUPERFAMILY Translation proteins 247 345 IPR009000 -
Car03g00103 664 CDD lepA_C 469 548 IPR035654 -
Car03g00103 664 PRINTS GTP-binding elongation factor signature 64 77 IPR000795 GO:0003924|GO:0005525
Car03g00103 664 PRINTS GTP-binding elongation factor signature 107 115 IPR000795 GO:0003924|GO:0005525
Car03g00103 664 PRINTS GTP-binding elongation factor signature 139 149 IPR000795 GO:0003924|GO:0005525
Car03g00103 664 PRINTS GTP-binding elongation factor signature 191 200 IPR000795 GO:0003924|GO:0005525
Car03g00103 664 CDD EF4_II 256 341 - -
Car03g00103 664 Pfam Elongation factor Tu GTP binding domain 62 246 IPR000795 GO:0003924|GO:0005525
Car03g00103 664 Hamap Elongation factor 4 [lepA]. 58 664 IPR006297 GO:0005525
Car03g00103 664 Gene3D Translation factors 252 348 - -
Car03g00103 664 Gene3D Elongation Factor G (Translational Gtpase), domain 3 352 433 - -
Car03g00103 664 Pfam Elongation factor G C-terminus 469 554 IPR000640 -
Car03g00103 664 CDD EF4_III 359 434 - -
Car03g00103 664 CDD LepA 63 248 - -
Car03g00103 664 Gene3D - 434 547 - -
Car03g00103 664 Gene3D - 60 250 IPR027417 -
Car03g00103 664 SUPERFAMILY EF-G C-terminal domain-like 360 437 IPR035647 -
Car03g00103 664 Gene3D - 548 622 IPR038363 -
Car03g00103 664 TIGRFAM lepA: elongation factor 4 62 663 IPR006297 GO:0005525
Car03g00103 664 Pfam GTP-binding protein LepA C-terminus 556 662 IPR013842 -
Car03g00103 664 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 49 662 - -
Car03g00103 664 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 100 115 IPR031157 -
Car03g00103 664 PANTHER TRANSLATION FACTOR GUF1-RELATED 49 662 IPR006297 GO:0005525
Car03g00103 664 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 60 249 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00103 Car-Chr3 2209503 2216337 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00103 62 200 Eukaryotic Initiation Factors Gene Family AT1G56070 41.497 1.86e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00103 K21594 - gmx:100781092 1173.3