Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00095 ATGGCAGGAATTACAAGAAAGATTACCTTTATCGTCTTGATTTTGGCCATTACTATTCCATGCCTTGAGGCTGGTATTGCTGAGTTTGATGATTATCTCAAAGAACAAGCCGATTTGGCCCGCCAAATTGCTCTTAAGTCATATGTGCCAAATCCTGAAAATATTACAACTGAGCTCAATCTACATGTCAATATGGCAATGGAAGAAGCTTATTCAAACAGTACAAGGAGGGAACTAAGGCAAAGGCAAAAGCATGGTGGATCATCAGCCTGCATGTCCAGTAATCCAATTGACAATTGTTGGAGGTGTAAAAAGGATTGGGCCCAAAACCGTCAACAATTGGCCCAATGTGGAAAAGGTTTTGGTAGAAAGGCAGTAGGTGGACTTGGTGGAAAATTCTATGTTGTTACTGATGAATCCGACAATGATTTGGTTACCCCAAAATTTGGTACCCTTAGATATGGTGCTGTTCAAAAAGGACCACTTTGGATTATATTTGCACGTAGCATGATCATTAGATTAAATCAAGAGTTGTTAGTTTCATCCGACAAGACCATTGATGGTCGTGGTGCCAATGTTCATATTAGGGATGGTGCTGGCATTACTATGCAATTTGTCAACAATGTCATTATTCATGGTCTTCACATAAGAAACATCAAGGCTAGATCTGGTGGTATGATTCGAGACTCTTATAATCATGTTGGACTAAGAACAAGAAGTGACGGTGATGCTCTCTCTGTCTTTGGTTCATCAAACATCTGGATTGATCATATTTCCTTATCTGAATCTGAAGATGGTCTTATCGATGTTATTCAAGGCTCTACTGCTATCACTATCTCAAATTGTCACATGACCAAACATAATGATGTGATGTTGTTTGGAGCTAGTGATTCATACTCAGATGACAAGATAATGCAAATAACAGTTGCATTCAACCATTTTGGACAAGGATTGATTCAAAGAATGCCAAGATGTAGATGGGGATTTTTTCATGTTTTGAACAATGATTACACACATTGGTTAATGTATGCAATTGGTGGTAGTTCAGGACCAACAATTCTTAGTCAAGGAAATCGTTTCATTGCACCAAACAACAATGCTGCAAAGACAATAACACATAGAGATTATGCATCACAAGATGTTTGGTCAAAATGGCAATGGAGATCAGAAAATGATTTGTTTATGAATGGTGCAACATTTATTGAGTCAGGAGCACCAATTAAGAATCTTCCATTCAAAAAAGGTTACCTAATGAAACCAAGACCAGGAACACAAGCTAATAGATTAACAAGATATGCTGGGGCACTAAATTGCCAAATTGGTAGGCCATGCTAG 1335 0.382 MAGITRKITFIVLILAITIPCLEAGIAEFDDYLKEQADLARQIALKSYVPNPENITTELNLHVNMAMEEAYSNSTRRELRQRQKHGGSSACMSSNPIDNCWRCKKDWAQNRQQLAQCGKGFGRKAVGGLGGKFYVVTDESDNDLVTPKFGTLRYGAVQKGPLWIIFARSMIIRLNQELLVSSDKTIDGRGANVHIRDGAGITMQFVNNVIIHGLHIRNIKARSGGMIRDSYNHVGLRTRSDGDALSVFGSSNIWIDHISLSESEDGLIDVIQGSTAITISNCHMTKHNDVMLFGASDSYSDDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNNAAKTITHRDYASQDVWSKWQWRSENDLFMNGATFIESGAPIKNLPFKKGYLMKPRPGTQANRLTRYAGALNCQIGRPC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00095 444 Gene3D - 94 437 IPR012334 -
Car03g00095 444 SUPERFAMILY Pectin lyase-like 95 435 IPR011050 -
Car03g00095 444 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Car03g00095 444 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Car03g00095 444 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Car03g00095 444 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Car03g00095 444 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Car03g00095 444 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Car03g00095 444 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Car03g00095 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Car03g00095 444 Pfam Pectate lyase 178 360 IPR002022 -
Car03g00095 444 PANTHER PECTATE LYASE 6 444 - -
Car03g00095 444 SMART amb_all 169 366 IPR002022 -
Car03g00095 444 Pfam Pectate lyase, N terminus 26 79 IPR007524 GO:0030570
Car03g00095 444 PANTHER PECTATE LYASE 18-RELATED 6 444 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00095 Car-Chr3 2000906 2003334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00095 8 444 Polysaccharide Lyase AT1G14420 54.586 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00095 K01728 - gmx:100780236 688.723