Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02253 ATGGGCAATACATGCCGTGGATCTTTGAAAGGAAAATATATTGAGGGCATTAGCCAGCCCCACTCAGAATCAGAGAATTCCAAACGCAGCAACACTTGTTGTGATCCCCCAGACTCATCATACCACCAAATCAAGAAACATTCCAATTCCAATTCTCCTCCTCCATCTTCACATAATCATCACCATCCTTCCAACTTCAAGAAAGACTCCATCATCATGCGCCGTGGCCCTGATAACCAGTCTTATTATGTCTTGGGTCATAAGACTCCCAACATTCGTGATCTCTACACTCTTGGCCGTAAACTTGGACAGGGTCAATTTGGTACCACTTATTTATGCACTGACAATTCCACCTCCATTGAATATGCTTGCAAATCCATCTCCAAGAGGAAGCTCATTTCCAAGGAGGACGTCGAGGATGTTAGGAGGGAAATTCAGATTATGCATCATTTGGCTGGTCACAAAAACATTGTCACCATCAAGGGTGCCTATGAGGATCCTCTCTATGTCCATATTGTTATGGAGCTTTGTTCTGGTGGTGAGTTGTTTGATCGCATCATCCAGAGAGGCCACTATACCGAGAGAAAGGCTGCTGACTTGACCAAAATTATTGTTGGTGTTGTTGAAGCCTGTCATTCCCTTGGTGTTATGCACAGAGATCTCAAGCCTGAAAACTTTTTGTTGGTCAACAAAGATGATGATTTCTCTCTTAAAGCTATTGACTTTGGCCTCTCTGTTTTCTTTAAACCAGGTCAAGTTTTCACTGACGTAGTTGGCAGCCCATACTATGTTGCTCCCGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCAGATGTTTGGACCGCCGGTGTCATACTTTATATATTGCTCAGTGGTGTACCACCGTTTTGGGCAGAGACCCAGCAGGGTATATTTGATGCTGTATTGAAGGGACATATAGATTTTGACTCAGATCCATGGCCTCTAATATCTGATAGTGGAAAAGATCTGATTAGAAAGATGCTGTGTTCTCAGCCTTCAGATCGGCTGACTGCTCATCAAGTCTTATGTCATCCTTGGATATGTGAAAATGGATTTTCTGCAATGAATAAGCTAAAGAAGATGGCATTGCGGGTAATTGCCGAAAGTCTATCTGAAGAGGAAATTGCTGGTTTGAGAGAAATGTTCCAGACTATGGATACTGATAACAGTGGTGCAATCACTTTTGATGAACTCAAAGCTGGTCTAAGAAGATATGGGTCTACCCTTAAGGATACAGAAATACGCGATCTTATGGAAGCGGCTGATGTGGACAACAGTGGAACTATAGATTATGGGGAGTTTATTGCTGCAACAGTTCATCTCAACAAACTGGAGCGTGAGGAACATCTTATTGCAGCATTCCAATATTTTGACAAGGATGGAAGTGGTTATATTACAGTTGATGAGCTTCAACAAGCTTGTGCTGAACATAACATGACTGATGTTTTTCTTGAAGATATTATCAGGGAAGTTGATCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGCTGCTATGATGCAAAAAGGAAATGTTGGAATTGGTAGGAGGACTATGCGCAACAGTTTAAATTTGAGCATGAGGGACGCGCCAAGTGCTCATTAG 1629 0.4223 MGNTCRGSLKGKYIEGISQPHSESENSKRSNTCCDPPDSSYHQIKKHSNSNSPPPSSHNHHHPSNFKKDSIIMRRGPDNQSYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTDNSTSIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAADLTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSGKDLIRKMLCSQPSDRLTAHQVLCHPWICENGFSAMNKLKKMALRVIAESLSEEEIAGLREMFQTMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIREVDQDNDGRIDYGEFAAMMQKGNVGIGRRTMRNSLNLSMRDAPSAH 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02253 542 ProSiteProfiles EF-hand calcium-binding domain profile. 416 451 IPR002048 GO:0005509
Car02g02253 542 ProSiteProfiles EF-hand calcium-binding domain profile. 491 521 IPR002048 GO:0005509
Car02g02253 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Car02g02253 542 Gene3D Phosphorylase Kinase; domain 1 98 181 - -
Car02g02253 542 ProSitePatterns EF-hand calcium-binding domain. 429 441 IPR018247 -
Car02g02253 542 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Car02g02253 542 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Car02g02253 542 Pfam Protein kinase domain 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g02253 542 ProSitePatterns EF-hand calcium-binding domain. 465 477 IPR018247 -
Car02g02253 542 Gene3D - 450 540 - -
Car02g02253 542 ProSiteProfiles EF-hand calcium-binding domain profile. 380 415 IPR002048 GO:0005509
Car02g02253 542 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 4 19 527 - -
Car02g02253 542 SUPERFAMILY Protein kinase-like (PK-like) 77 366 IPR011009 -
Car02g02253 542 SMART efh_1 490 518 IPR002048 GO:0005509
Car02g02253 542 SMART efh_1 420 448 IPR002048 GO:0005509
Car02g02253 542 SMART efh_1 456 484 IPR002048 GO:0005509
Car02g02253 542 SMART efh_1 384 412 IPR002048 GO:0005509
Car02g02253 542 SUPERFAMILY EF-hand 360 518 IPR011992 -
Car02g02253 542 ProSiteProfiles EF-hand calcium-binding domain profile. 452 487 IPR002048 GO:0005509
Car02g02253 542 ProSitePatterns EF-hand calcium-binding domain. 393 405 IPR018247 -
Car02g02253 542 Pfam EF-hand domain pair 455 516 IPR002048 GO:0005509
Car02g02253 542 Pfam EF-hand domain pair 385 445 IPR002048 GO:0005509
Car02g02253 542 MobiDBLite consensus disorder prediction 19 60 - -
Car02g02253 542 MobiDBLite consensus disorder prediction 1 71 - -
Car02g02253 542 Gene3D Transferase(Phosphotransferase) domain 1 182 358 - -
Car02g02253 542 Gene3D - 359 449 - -
Car02g02253 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 527 - -
Car02g02253 542 SMART serkin_6 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g02253 542 ProSiteProfiles Protein kinase domain profile. 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g02253 542 CDD STKc_CAMK 96 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02253 Car-Chr2 52571136 52577675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02253 1 538 EF-hand Containing Proteins AT2G17290 80.360 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Car02g02253 Pkinase 2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02253 K13412 - gmx:100778173 963.755