Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02249 ATGGAGTATGGCGGTGGGTTAGTGGAGGATTGTGGTGGTTTTGGGACGATGGTGGGAGGAGAAACAGACATGATTGAGGAGCTGTTGGTAGAAGGTTGTTGGGTTGAAGCAAGTGAGAACAATTtgatgatgatgcatcatgatgatCACATGAGTAGTAGTACTACGCCACAACCACACTACATCCCAATGGGAGATAATGATGAAGAAAGTGGTAACTTTGTTGTTGGGAAGAGATGGTGGATTGGGCCTCAGGCGAATCCAGGCCCATCAACATCCGTGAAAGAGAGATTAGTACTTGCTGTTGGTTACTTAAAAGAGTACACAAAGaattccaactcaaattcaacttcaaattcaaattcaaattcaaactcaaactcaaacgttcttattcagatATGGGTACCACTAAGGAGGAGATCAGGACTATTTCACAATCAGTATCATAATCCTAATCCAGTACATGAATCTCTTCCAATTTCAGTTCCAAACAGCAACGTTCAGGTTCGTTTCTTTAGAAGTCACGAGTATCCACGCGTTCAGGCACATCACGGATCTCTTCTAGCACTTCCTGTTTTCGAAAGAGGAACCGCTACATGCCTCGGCGTCATCGAGTTTTTAATCGCCAATCAAAACCTCATCAATTACCGTCCACAACTTGATCATCTATCCAATGCTCTCGAGGCAGTTGATTTTACAAGTAACCAGAACATGATTCCACCCGCTGTAAAGGTATTTGAGGAGTTGTATGAAGCAGCAGTGAACGAGATCGTACAAGTGTTGGCGTCGGTGTGTAAGACGCACAATCTGCCATTGGCACTAACATGGGCTCCGTGCATACAACAAGAAGGAGGCGGAAGAGGAAAGGGTGGATGCagcaatagcaatggcaatagcaatagcaatagcaatGGTAGTAACAACAACATGATGATGAGTTGCGTATCAACGGTTGATTCAGCTTGTTACATTGGTGACGTGGATGTATTGGGATTCCAAGAAGCGTGCAGTGAGTATCATCTTTATAACGGACAAGGAATAGTAGGAACAGCATTCACAACAACGAAACCTTGTTTTGCAATTGACATAACCGCTTTCAGCAAAGCAGAATACCCACTCGCACACCATGCTAACATGTTTGGTTTACACGCTGCTGTTGCCATTCCACTAAGGAGTGTCTACACTGGATCCGCAGCTGATTTCGTTTTGGAGTTTTTCCTTCCTAAAGATTGCCTTGACACACACCAACAGAAACACATGCTCAACTCCTTATCCCTTGTTGTTCAACAAGCTTGTAGGAGCTTGCATTTACATGTCGTCATGGAAGATGatcatcataatcataatcatcatcatcttcatcatcaacatcaacatcaacatcaACATGAAGAAGATCAATTCACATTCCCCACCACAAATATTTACATGCCTTCTGTCGACGCTGCTGCTGCTGCACCAGTTGTAGTACTATCACAAGTTGAAGCAGATGCATCAGCTTCAGCATCAGCTTGTTCAACAAAAGAGACAACGTCGTCCTCGTGTTCTTGGATTGCACATATGATGGAGGCACAGCACAAGGGGAAAGGTGTGTCCGTGTCGTTGGAATACCTTCAAGAGCCTAAAGAGGAGTTCAAAGTAACAACCTGCAATTGGGAGAGGGAGAGGGAGGGTAATTCTGTGTTTTCAGAATTTGGTCAAGTACTGCAGCAGCAGCAGCATGAACACCAAAGCATGAGTAATTCAAGAGCAAGTACTGTTGTGAGTGTAGAAGGTGGAGAAGAATCtggcggaggaggtggaagtggtggtggtggtCGCAGGTCATCATGCTCCTCAAATGGGAGAAAGTCAGGCGACAAGAGGCGGACAAAGGCGGAGAAGACTATAAGCTTGCCAGTTCTGAGACAATACTTTGCCGGAAGCCTAAAAGACGCGGCAAAGAGCATCGGTGTATGTCCGACAACACTGAAAAGGATATGCAGACAGCATGGAATAACGAGGTGGCCTTCAAGGAAAATAAAGAAGGTGGGACACTCTTTGAAGAAGCTTCAACTTGTTATTGATTCCGTACAAGGTGCTGAGGGTGCCATACAAATTGGCTCCTTCTATGCTAGTTTTCCAGAGTTGAGCTCTGCAACTGGACATTCTGATCAATCTTCTATGAAATTAATGCATAATCATGGTGTTTCTGATCACCACAACAGCTTCTATGGAGATGGAGGAGTTACCACTAGTAATTTGAAATCCCCATCCTCTGCTTGCAGTCAGACTGTAGGAAACCAAACAAATTCAACTCTCATCAATAATAATGTTGTCTTGATGACAGAAAGCAatgctctagcttcaactgatcatgctcatgctcatgctcatgcAGCAGCATTGATGCAAATTAGGAGAACTCACAGCGAAGCAGAATTGCTCCACCACCATACATCCAATATTGATATTCAAGATTACCAGCTGCACGATCAGGATACTAAACAGTTATTGCTACATTTCAACAAGAGTCAAACCCTACCTCCAAGACCAAGtactactactactactaATGGGTATAATAACTCATTGGAAAGGGGTGCTTTCAGAGTGAAGGCAACATTTGCTGATGAAAAAATACGATTTAGCTTGCAAGGAATGTGGTGTTTTAGAGATTTGCAGGTTGAGATAGCAAGGCGTTTCAACTTAAATGATATGAACAATTTGGTAGTAAAGTATTTGGATGATGAAGGAGAATGGGTTGTTTTAGCATGTGATGGTGATCTTGAGGAATGTAAAGATTTGCATACATCATCTCACACACGTACCATAAGACTCTCTCTATTTCAAGCTTCGCCTCTCAATCTTCATCCAAACACATTCCGCAACACCAGCAGCAGCCCCCCATCTTCTTCCTAG 2904 0.397 MEYGGGLVEDCGGFGTMVGGETDMIEELLVEGCWVEASENNLMMMHHDDHMSSSTTPQPHYIPMGDNDEESGNFVVGKRWWIGPQANPGPSTSVKERLVLAVGYLKEYTKNSNSNSTSNSNSNSNSNSNVLIQIWVPLRRRSGLFHNQYHNPNPVHESLPISVPNSNVQVRFFRSHEYPRVQAHHGSLLALPVFERGTATCLGVIEFLIANQNLINYRPQLDHLSNALEAVDFTSNQNMIPPAVKVFEELYEAAVNEIVQVLASVCKTHNLPLALTWAPCIQQEGGGRGKGGCSNSNGNSNSNSNGSNNNMMMSCVSTVDSACYIGDVDVLGFQEACSEYHLYNGQGIVGTAFTTTKPCFAIDITAFSKAEYPLAHHANMFGLHAAVAIPLRSVYTGSAADFVLEFFLPKDCLDTHQQKHMLNSLSLVVQQACRSLHLHVVMEDDHHNHNHHHLHHQHQHQHQHEEDQFTFPTTNIYMPSVDAAAAAPVVVLSQVEADASASASACSTKETTSSSCSWIAHMMEAQHKGKGVSVSLEYLQEPKEEFKVTTCNWEREREGNSVFSEFGQVLQQQQHEHQSMSNSRASTVVSVEGGEESGGGGGSGGGGRRSSCSSNGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSSATGHSDQSSMKLMHNHGVSDHHNSFYGDGGVTTSNLKSPSSACSQTVGNQTNSTLINNNVVLMTESNALASTDHAHAHAHAAALMQIRRTHSEAELLHHHTSNIDIQDYQLHDQDTKQLLLHFNKSQTLPPRPSTTTTTNGYNNSLERGAFRVKATFADEKIRFSLQGMWCFRDLQVEIARRFNLNDMNNLVVKYLDDEGEWVVLACDGDLEECKDLHTSSHTRTIRLSLFQASPLNLHPNTFRNTSSSPPSSS 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02249 967 CDD PB1_NLP 864 945 IPR034891 -
Car02g02249 967 MobiDBLite consensus disorder prediction 569 628 - -
Car02g02249 967 Gene3D - 862 948 - -
Car02g02249 967 Pfam RWP-RK domain 631 678 IPR003035 -
Car02g02249 967 ProSiteProfiles RWP-RK domain profile. 617 698 IPR003035 -
Car02g02249 967 PANTHER PROTEIN NLP2 26 951 - -
Car02g02249 967 ProSiteProfiles PB1 domain profile. 863 946 IPR000270 GO:0005515
Car02g02249 967 MobiDBLite consensus disorder prediction 569 590 - -
Car02g02249 967 SMART PB1_new 863 946 IPR000270 GO:0005515
Car02g02249 967 SUPERFAMILY CAD & PB1 domains 853 948 - -
Car02g02249 967 Pfam PB1 domain 864 945 IPR000270 GO:0005515
Car02g02249 967 PANTHER PROTEIN NLP8 26 951 IPR045012 GO:0003700
Car02g02249 967 MobiDBLite consensus disorder prediction 448 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02249 Car-Chr2 52515863 52519619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02249 21 951 NLP Transcription Factor Family AT4G35270 37.934 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Car02g02249 PB1 1.6e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02249 - - cam:101498016 1718.36