Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02248 atgagagagTCCGATAGTGGTGATGAATACAaagcagaagaagaagaagaacaacaacaacaacatccatcttcttcttcccATTCTGGAAAGAAGAGGAAGGCGAAAACTGATCATCCCGAAGGAAGTAACAACATTGCTCGTTCGTGTACTGAGTGCGGTAAGAAGTTTTGGTCATGGAAGGCTCTTTTCGGTCACATGCGTTGCCATCCTGAGCGTCAATGGAGAGGCATTAATCCTCCTCCCAATCTGAAACGAAAAAAACTTCAACAACAGACGAATATGACTCCGGAGGATCACGAAGTTGCGGCGTGTTTGCTCTTACTTGCAAATTCAAAGCCAAACAATAACAACAATAAAGGGAAGTTTAAAGCATTAATGGTGGATGATTCTTCTTGTTCATTATTATCAATGGAGAGTAGTCAGTTCGTGTGTTCATGTTGCAACAAAGTATTTGGATCTCATCAAGCACTTGGAGGACACAGGGCTAGTCACAAGAATGTCAAGGGATGCTTCGCCAATACAACCGCTTCCACAACAACAACAAAACTGATGACGTGGACACAATCAgatcatcatgatcatgatgaacaccatgatgacggttatggtgaCGTGGAAGGAGAAGGAGCGGTTATtaataataataataataataataataataataataataataatGAAATTAGTggaggaggaggaggaggaggaCACAAGTGTAGCATATGCTTGAGGGTATTTACGACTGGACAAGCACTTGGTGGTCACAAGAGGTGTCATTGGGAAAGAGGGGAAACCACCGCACCCTTCGACTCTTCTACTGATGCACCATCCAACAATTCTCGTATTAATCTCGACTTGAATTTCcctcttcctcctcctcctccccctccCGatcatgatcatgatcatcattgttcatcttcttcctcttcTCCTCCCACTCTTGATTTGAGGTTGGGACtttaa 969 0.3323 MRESDSGDEYKAEEEEEQQQQHPSSSSHSGKKRKAKTDHPEGSNNIARSCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNLKRKKLQQQTNMTPEDHEVAACLLLLANSKPNNNNNKGKFKALMVDDSSCSLLSMESSQFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTASTTTTKLMTWTQSDHHDHDEHHDDGYGDVEGEGAVINNNNNNNNNNNNNNEISGGGGGGGHKCSICLRVFTTGQALGGHKRCHWERGETTAPFDSSTDAPSNNSRINLDLNFPLPPPPPPPDHDHDHHCSSSSSSPPTLDLRLGL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02248 322 MobiDBLite consensus disorder prediction 268 286 - -
Car02g02248 322 Pfam C2H2-type zinc finger 143 166 - -
Car02g02248 322 Pfam C2H2-type zinc finger 238 262 - -
Car02g02248 322 Pfam C2H2-type zinc finger 50 72 - -
Car02g02248 322 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Car02g02248 322 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Car02g02248 322 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Car02g02248 322 MobiDBLite consensus disorder prediction 190 206 - -
Car02g02248 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Car02g02248 322 SMART c2h2final6 143 165 IPR013087 -
Car02g02248 322 SMART c2h2final6 238 260 IPR013087 -
Car02g02248 322 SMART c2h2final6 48 70 IPR013087 -
Car02g02248 322 MobiDBLite consensus disorder prediction 211 230 - -
Car02g02248 322 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 14 322 - -
Car02g02248 322 MobiDBLite consensus disorder prediction 268 322 - -
Car02g02248 322 MobiDBLite consensus disorder prediction 1 45 - -
Car02g02248 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Car02g02248 322 SUPERFAMILY beta-beta-alpha zinc fingers 49 165 IPR036236 -
Car02g02248 322 MobiDBLite consensus disorder prediction 190 230 - -
Car02g02248 322 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 14 322 - -
Car02g02248 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 260 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02248 Car-Chr2 52495417 52496397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02248 46 322 C2H2 Transcription Factor Family AT4G35280 45.139 2.55e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car02g02248 zf-C2H2_6 1.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02248 - - cam:101508937 505.753