Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02239 ATGGAGATGCAACAGCTTCTTAGCATGGGCTTCCCCGACGAGTTAGCCGCCCAAGCCTTGGCTGCCACCGGCGGCAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCAcaaacccaactccaatcctattcctaatcctaatcctaatccatcatcatTTGCTTTCCAACCCAAACTCGACCGCTTCTTTCAATCCCCATCTCCACCACCACCCATTGACTCacaacaacaacaaaaagaagaagaacaacaacaacaaGCAGATGAACCAACCAAACGCATCAAGTTATCACcacaaacgcaaacacaaacacaaacacaaacCCAACAAAACAAGTCCGCATTTTTCTTCAACCGTTCCAAAAAACAAACCCAAACTCACGGACCCTTATACGAACGTTTGCGTCCCAGAACATTGGACGAGGTTGTCGGACAAGACCATCTTCTCGCAAACAATTCCATTCTCCGCTCCGCAATCCAACGCAACCGTCTCCCTTCAATACTCCTGTGGGGTCCACCTGGCACAGGTAAAACCACTATCGCCAAAGCTATTGTAAATTCATCACCAACAACTTCCACTTTCTATCGCTTTGTCTCTTTATCTGCTGTTACTAGTGGTGTTAAAGACGTTAGGGATGCTGTTGATGAAGCTAGAAAACTCAGAATCAAAACAAATCAAACCACTGTTCTCTTTGTGGATGAGGTTCACAGGTTTAATAAATCTCAACAGGATTCTTTCTTACCTGTCATTGAAGATGGTAGCATTGTTTTCGTTGGTGCCACTACTGAAAACCCTTCTTTTCATTTGATTACACCACTTTTGTCTCGTTGTCGTGTCCTTACTCTTAACCCTCTTCAACCCCATCACCTGCTTTTGCTTCTCAACAGGGCTGTAACTGACACAGACAAAGGGTTGGTGCAAAGCCTTGGTTTTGGTTCTGATTCTTCCCACGTTGATGTCAGTGTCCGTGATGAGGTTGTTGATTTTATAGCTAAAAATTGTGATGGGGATGCTCGTGTTGCTTTGAATGTGTTGGAGATtgctgctgttactgctgctgctCGGGTACAAGTACAGCATGATAATGAAGAATGTCTTGGTGTTAATGTTACTGTTGAGGATGCAAAGGAGGCACTTCAATGCAAGCATCTTGCTTATGATAAAGCTGGGGAAGAACACTATAATTTAATCAGTGCATTGCACAAGTCTATGAGGGGAAGTGATGCTGATGCAGCTATTTATTGGCTAGCAAGAATGTTAGAAGGAGGTGAAGAGCCACTTTATATTGCACGTAGGCTTGTAAGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCTTTAGCTCTTAATCAAGCTGTTTCCTGCTACCAAGCTTGTCACTTTATAGGAATGCCTGAGTGCAATGTCATTCTTGCACAATGTGTTGCATACTTGGCTTTGGCTCCTAAATCTGTAGCAGTTTATAGAGCAATTGGAGCTGCTCAGAAGGTAGTGAAGGAATCAGTTGGACAGAATGAAGGGGTGCCTCTTCATCTCAGGAATGCACCAACCAAATTAATGAAGGAAATTGGGTATGGGAAAGGATACATATACCCTCCTGATAACCCTTCCTCAACACAGAGCTACTTGCCACCCTCTCTTCAAGGATTCAAATTCCTCCATTGGCCTGACAGGAATACCTCTGAATCTGATGGATGA 1704 0.4079 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPNSNPIPNPNPNPSSFAFQPKLDRFFQSPSPPPPIDSQQQQKEEEQQQQADEPTKRIKLSPQTQTQTQTQTQQNKSAFFFNRSKKQTQTHGPLYERLRPRTLDEVVGQDHLLANNSILRSAIQRNRLPSILLWGPPGTGKTTIAKAIVNSSPTTSTFYRFVSLSAVTSGVKDVRDAVDEARKLRIKTNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLLLLLNRAVTDTDKGLVQSLGFGSDSSHVDVSVRDEVVDFIAKNCDGDARVALNVLEIAAVTAAARVQVQHDNEECLGVNVTVEDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLEGGEEPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSVAVYRAIGAAQKVVKESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYPPDNPSSTQSYLPPSLQGFKFLHWPDRNTSESDG 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02239 567 Gene3D - 2 54 - -
Car02g02239 567 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 15 564 - -
Car02g02239 567 Pfam MgsA AAA+ ATPase C terminal 408 561 IPR021886 -
Car02g02239 567 Gene3D - 486 565 - -
Car02g02239 567 PRINTS CbxX/CfqX superfamily signature 168 183 IPR000641 GO:0005524
Car02g02239 567 PRINTS CbxX/CfqX superfamily signature 219 238 IPR000641 GO:0005524
Car02g02239 567 PRINTS CbxX/CfqX superfamily signature 339 351 IPR000641 GO:0005524
Car02g02239 567 MobiDBLite consensus disorder prediction 36 133 - -
Car02g02239 567 Pfam AAA C-terminal domain 321 407 IPR032423 -
Car02g02239 567 SUPERFAMILY post-AAA+ oligomerization domain-like 392 562 IPR008921 GO:0003677|GO:0006260
Car02g02239 567 CDD HLD_clamp_RarA 297 382 - -
Car02g02239 567 Pfam ATPase family associated with various cellular activities (AAA) 169 281 IPR003959 GO:0005524|GO:0016887
Car02g02239 567 Gene3D - 287 368 - -
Car02g02239 567 Gene3D - 382 485 - -
Car02g02239 567 Gene3D - 119 285 IPR027417 -
Car02g02239 567 SMART AAA_5 165 287 IPR003593 -
Car02g02239 567 MobiDBLite consensus disorder prediction 92 129 - -
Car02g02239 567 CDD AAA 145 280 - -
Car02g02239 567 SUPERFAMILY UBA-like 3 43 IPR009060 GO:0005515
Car02g02239 567 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Car02g02239 567 Pfam UBA/TS-N domain 4 35 IPR015940 -
Car02g02239 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 368 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02239 Car-Chr2 52434920 52436940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02239 131 408 Core DNA Replication Machinery Family AT1G77470 24.055 6.11e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02239 K07478 - gmx:100799257 811.216