Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02232 ATGGCGCAGCCAAACAAACAACTTCCCTGCGACTCCGATGGCTTCTGCATGCTCTGCAAATCGAAACCTTTGGAAACTGAAACACTTCACTGTCGAACATGTGTTACTCCTTGGCATGTTCCATGTTTACCCCTTGTTCCGACAACTCTTCTCGATTGGGAATGTCCTGATTGTTCTCAACTCGTTGATGCTCCTGCTCCTTCCATCGCCGGCGAACTTGTTTCCGCTATTCGCGCTATTGAAAATGATCCTTCTCTTACCGATGAAGATAAAGCGAAGAAGCGTCAAGAACTCGTTGGTGGATCTTCTTCTAATCCTACTTCCGATCATTCTAATTCAAACAAAACTAAAACTAATGGCGTCCTTGATATCTTGAATGGTTCTCTTAACTGTTCCTTTTGCATGCAGTTGCCCGAGAGACCCGTCACTACTCCATGTGGGCACAATTTTTGTTTGAAGTGTTTTGAGAAATGGATTCAGCAAGGAAAAAGAACTTGTGCGATTTGCAGGACTTCAATCCCACCAAAGATGGCTAGTAATCCGAGGATCAATGCACAATTAGCTATTGCGATTCGTATGGCTAAGTTAGCGAAATCGGAGAATGTTGGAGGGAGTAGTGCTCACAAAGTTTATCACTTTGTTGGCAATGATGAGCGTCCTGATACTGCTTACACCACTGAGAGAGCAAAGAAGTCAGGGAAGGCTAATGCTGCTAGTGGGAAAATATTTGTGACAATTCCGAAGGATCATTTTGGACCTATTAGTGCTGAGAATGATCCAATAAGGAATCAAGGGGTTCTTGTTGGAGAAACATGGGAGGATAGAATGGAATGTAGGCAATGGGGTGCTCATTTCCCCCATGTTGCTGGAATTGCTGGTCAGAGTACTCATGGTGCTCAATCTGTTGCTCTTTCTGGTGGCTATGTTGATGACGAAGATCACGGTGAGTGGTTCCTTTACACTGGTAGTGGTGGAAGGGATCTAAGTGGTAACAAGCGTACCAACAAAGATCAGTCCTTTGATCAGCAGTTTGAGAACATGAATGAGGCTTTGAGAGTCAGTTGTCGTAAAGGCTATCCTGTTCGTGTTGTTAGGTCCCACAAGGAGAAACGTTCTGCTTATGCACCACCAGAGGGTGTGAGATATGATGGGGTTTATAGAATTGAGAAGTGCTGGCGCAAAGTTGGAAAACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAACCAGCTCCATGGACAAGTGATTTATCTGGAGATCGTCCCCGTCCATTGCCTAAAATTAAGGAGTTTAAGGAGGCAGTTGATATTACTGAAAGAAAGGGTGATCCATCATGGGACTTTGATGAGGAAAAGGGATGCTGGTTGTGGAAGAAGCCTCCACCACTAAGTAAGAAGCCAGTGAACATTGTGGATCCTATTGATGGAACAAAAATAACAGTTGTCAGGCCAAGTGCTAAAAAAGTGTCCTTCAAGATCAAAGATAGGCTATTGAAAGAGTTTGGTTGCAATATATGCCGCAAGGTGTTGGCTTCCCCTCTTACTACACCTTGTGCTCATAACTTCTGCAAAGCCTGCCTGGAGGGTGCTTTTTCTGGCCAAAGTTATATCAGGCAGAGAGCATCTCAGAGTGGGCGCACTTTGCGTGCACAGAAGAATGTTATGAAATGCCCTACCTGTTCAACTGACATTGCTGATTACCTTCAGAATCCACAGGTTAACAGGGAAATGATGGGTGTCATAGAATCACTCCAGCAACAGGCTGAACAACAACGGATGGAGGAGAGTTCTGAAGAATCAAGTGCTAAGGTGGAGGAGAATTCTGAAGAATCAAGTGCTAAAAATGATGAAATTCCGAAGCTGGACGAGGACACTGATGTTTCAAAACCCAGTGATTCAAGTGAAAAAATATTGGAGGAAATTAACGACAATGATCTGAAACGTCCTCAGAAGCGTAGGAAAGGCCCTGATGGCAAGGCGGTGACCGTGGAGGAACATATTGATGAGGCAGAAACTGAAGCTAAGGCAGTGACTTGCAAGTAG 2055 0.4438 MAQPNKQLPCDSDGFCMLCKSKPLETETLHCRTCVTPWHVPCLPLVPTTLLDWECPDCSQLVDAPAPSIAGELVSAIRAIENDPSLTDEDKAKKRQELVGGSSSNPTSDHSNSNKTKTNGVLDILNGSLNCSFCMQLPERPVTTPCGHNFCLKCFEKWIQQGKRTCAICRTSIPPKMASNPRINAQLAIAIRMAKLAKSENVGGSSAHKVYHFVGNDERPDTAYTTERAKKSGKANAASGKIFVTIPKDHFGPISAENDPIRNQGVLVGETWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQQFENMNEALRVSCRKGYPVRVVRSHKEKRSAYAPPEGVRYDGVYRIEKCWRKVGKQGHKVCRYLFVRCDNEPAPWTSDLSGDRPRPLPKIKEFKEAVDITERKGDPSWDFDEEKGCWLWKKPPPLSKKPVNIVDPIDGTKITVVRPSAKKVSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKACLEGAFSGQSYIRQRASQSGRTLRAQKNVMKCPTCSTDIADYLQNPQVNREMMGVIESLQQQAEQQRMEESSEESSAKVEENSEESSAKNDEIPKLDEDTDVSKPSDSSEKILEEINDNDLKRPQKRRKGPDGKAVTVEEHIDEAETEAKAVTCK 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02232 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 70 IPR013083 -
Car02g02232 684 MobiDBLite consensus disorder prediction 596 684 - -
Car02g02232 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 197 IPR013083 -
Car02g02232 684 Pfam RING-type zinc-finger 507 548 IPR027370 -
Car02g02232 684 ProSitePatterns Zinc finger PHD-type signature. 16 58 IPR019786 -
Car02g02232 684 SMART ring_2 131 169 IPR001841 -
Car02g02232 684 SMART ring_2 507 564 IPR001841 -
Car02g02232 684 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 6 650 - -
Car02g02232 684 SUPERFAMILY PUA domain-like 235 429 IPR015947 -
Car02g02232 684 CDD RING-HC 131 169 - -
Car02g02232 684 MobiDBLite consensus disorder prediction 589 684 - -
Car02g02232 684 SUPERFAMILY RING/U-box 499 591 - -
Car02g02232 684 ProSiteProfiles Zinc finger RING-type profile. 507 565 IPR001841 -
Car02g02232 684 MobiDBLite consensus disorder prediction 98 117 - -
Car02g02232 684 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 6 650 IPR045134 -
Car02g02232 684 MobiDBLite consensus disorder prediction 84 117 - -
Car02g02232 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 618 IPR013083 -
Car02g02232 684 ProSiteProfiles Zinc finger RING-type profile. 131 170 IPR001841 -
Car02g02232 684 Pfam SAD/SRA domain 264 412 IPR003105 -
Car02g02232 684 SUPERFAMILY FYVE/PHD zinc finger 8 62 IPR011011 -
Car02g02232 684 SUPERFAMILY RING/U-box 123 178 - -
Car02g02232 684 Gene3D - 232 426 IPR036987 -
Car02g02232 684 SMART G9a_1 256 413 IPR003105 -
Car02g02232 684 ProSiteProfiles YDG domain profile. 261 409 IPR003105 -
Car02g02232 684 Coils Coil 578 605 - -
Car02g02232 684 Pfam Zinc finger, C3HC4 type (RING finger) 129 173 - -
Car02g02232 684 ProSitePatterns Zinc finger RING-type signature. 522 531 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02232 7 594 C2H2 Transcription Factor Family AT5G39550 61.526 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02232 K10638 - gmx:100786796 927.546