Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02207 ATGCAATCCGATAATGGCAAGCTATTTATAGGTGGAATATCTTGGGACACAAATGAAGAACGACTCAGAGAGTATTTCAGTACTTATGGTGAAGTTAAGGAAGCAGTGATAATGAAGGATCGGACAACCGGTAGAGCCCGTGGATTTGGTTTTGTTGTTTTTATCGATCCAGCAGTTGCAGAAATTGTCATAAAAGAGAAGCACAACATTGACGGACGGATGGTTGAGGCGAAGAAAGCTGTTCCTAGGGATGATCAAAACGTATTGAGTAGAAACAGTGGTAGCATCCAAGGTTCTCGTGGTCCAGGTCGCACGAGAAAGATATTTGTTGGGGGCTTAGCTTCTACTGTAACAGAGAGTGATTTCAAGAAGTATTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTATGATTCTGAAGAGGCTGTTGACCAGGTCTTACTTAAGACGTTTCATGAATTGAACGGGAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCTAGCCGCAGTCCTCTTAGTGGATATAACTATGGTCTGAGTAGGGTCAATAGTTTCTTAAACGGCTTCACTCAGGGGTATACTCCAAATACTGTTGGAAACTATGGACTTCGGATGGATGGTAGGTTCAGTCCGGTTGCCGGCGGTCGAAATGCATTTGCACAGTTTGGATCTGGTTATGGAATGAGTATGAATTTTGAGCCTGGTTTGAGTGCTGGATTTGGGGGAAATGCAAATTTCAATGGCAATCTTAGCTACGGACGGGGCTTAAACCCTTACTTTATCGGCAACTCCAATAGGTTTGGAAGTCCTGTTGGATATGAAAGTGGTAACGGAGGAAACAGTTCTTTCTTCAGTTCCGTGACTCGAAACTTGTGGGGAAATGGAAGCCTTAACTACGGAACAAGTTCTGCAAATTCCAATGCATACATTGGATCAGGGAGTGGGAGTGTTGGAGGAAACACGTTCAGCAATACTGGAGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGACACGGTGGAGGGAACAATGTGTCGCAGAGTGGTGGCAACCTTGGATATGGAGGTGGCAACAATGGTTATGGATTGGGGACCGAAGGTTATGGAAGAAGCAGTGGTTCCACTCTTGCACCGACATCTTCATACTCTACATCAAATGGTGGTGGGGGTGTTGATGGGGCTTTTGCCGATTTTTACAACAATAATTCAGTCTATGGGGACCCAACTTGGCGATCTTCAAACTCTGAGAGAGATGGATCTGGTCCCTTTGGTTACGGACTTGGTGGTGCAGCTTCGGATGTTTCTGCCAAGACTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGAATTACTACATAG 1446 0.4454 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNVLSRNSGSIQGSRGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLSGYNYGLSRVNSFLNGFTQGYTPNTVGNYGLRMDGRFSPVAGGRNAFAQFGSGYGMSMNFEPGLSAGFGGNANFNGNLSYGRGLNPYFIGNSNRFGSPVGYESGNGGNSSFFSSVTRNLWGNGSLNYGTSSANSNAYIGSGSGSVGGNTFSNTGGVNWGSSAISGHGGGNNVSQSGGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGGVDGAFADFYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKTSPGYVGGYTVNKRQPNRGITT 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02207 481 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 480 - -
Car02g02207 481 SMART rrm1_1 107 179 IPR000504 GO:0003723
Car02g02207 481 SMART rrm1_1 7 78 IPR000504 GO:0003723
Car02g02207 481 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Car02g02207 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Car02g02207 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Car02g02207 481 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Car02g02207 481 Gene3D - 4 88 IPR012677 -
Car02g02207 481 Gene3D - 103 189 IPR012677 -
Car02g02207 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Car02g02207 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 480 - -
Car02g02207 481 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Car02g02207 481 MobiDBLite consensus disorder prediction 460 481 - -
Car02g02207 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Car02g02207 481 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02207 Car-Chr2 52204199 52208972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02207 8 281 Eukaryotic Initiation Factors Gene Family AT1G71770 27.564 1.96e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02207 K14411 - gmx:100795907 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02207 02 52204199 52208972 Car02g02207 02 52204199 52208972 ECH
Car05g01892 05 64102854 64104877 Car02g02207 02 52204199 52208972 PCT