Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02203 ATGGATTCTTCACAAGAAAGTGCTGATCACGATGTTTCTTCTGATAAAGTACAGCAGGAAGCGAATCCTCAGAGCGATACCTCAATGTCACAAGAGATTGATGATGATACTAAAACCAATTTGTCCGAACCTGAGGAAGCAAAAAGTATTCCCTCTATTGAAGCTCAAAATGAAATGGGTGATTCTAATGCAACTGTTCGTGCCTTGGTATTGCCAAACTCTATACCACTTGAGGAACATTCGCAGAGCTCCAATACTCTTTCGCAGGAATTGCCTCCGTTGCGATCTGGTCAGGACAGTCTCTCTATACGGGAAAAGGTATCACAAGACGGCTATAACTGGCGAAAGTACGGCCAGAAAAATGTTAAGCGGATTGAATTGATAAGGAGCTATTACAGATGTACGCATTTAGACTGCCAGGCGAAAAAGAAATTGCACCTGTTAAATGATGGGAGCTTTGCAGGTTACACTTTCGTCGGTGAGCATAATCATGCTGGACCTCAATCAAACACCGTATCATCGCCAGTTGATCGTGTTCTTCCTGTTGTTGAACAAGGATCACATAGTAGATCCTCATTGGCCGGTGTGGAAGGTCAAGACAAATCATCTGGTGAGGATGAACGTAGGCCTCAACAGATCAAGCCTTTACATTCTGTTCCAGCTTCAAAAGTTTCCGGAACTGATGAGTTAAAAGCTGCACAGTCACAATTGGCAGCGAAGGGCGAGGTTCATAAATATGAGAATCGCGAGGCAAAGCGGCTGAAGAAAGACAATAGTAATACTGATACCAATGGAATCGGCGTGTCAACTGGTGAATCTGGCGTTGTTGTTGTTGAGACTGAAAGTGAAGTTGATTTTGTAAATGATGGGCATCGCTGGCGCAAATACGGGCAGAAAATGGTTAAAGGGAATACAAATCCAAGACATTATTATCGATGCTCGTATCTTGGATGCCCCGCCAAAAGGCGTGTTGAAAGGTCCCCTCGTGAGCCAAAAAATGTCATATCTACCTATGAGGGACAGCATGATCATGAAAACCCAGCTGAAAGGGGTGTCACTCATAATACAGCTAAAAATACTCAGACAAAGGGTATTAATGGTAAGATGAAAACCCAATCTGGAGGTAATACGGTTTATGCCGAAACAGGAGAGTGCAGCTACTCGCACTCAAAAAGCTGGTTAAATAAAGAGTCAAATAGTAAACCAAACTATGATAGTATTTTTCGTGCGGTCGTCCTTCCTGACATTGGTCTTAAATGTGAATTAAATGAGGAAGAGCAACAAAATGAAGACCCTAGTACCAAAGAAGATTCTGTCAGCAATGCCATGATGCTCGATCCAAGTTCCGAAGTTCCAAGCAGATCAAATGAACATGTGGAAGATGAGGTAAGAACTACATCAGAAGGGATTAACGATTGCGCTAATGTGGTTACTGGTCATGATACTTCTAGTACAACAAGTGAATTCGATAAGGAATCAACATCTGATACAGAACCTTTCCAAAGCTAA 1509 0.4241 MDSSQESADHDVSSDKVQQEANPQSDTSMSQEIDDDTKTNLSEPEEAKSIPSIEAQNEMGDSNATVRALVLPNSIPLEEHSQSSNTLSQELPPLRSGQDSLSIREKVSQDGYNWRKYGQKNVKRIELIRSYYRCTHLDCQAKKKLHLLNDGSFAGYTFVGEHNHAGPQSNTVSSPVDRVLPVVEQGSHSRSSLAGVEGQDKSSGEDERRPQQIKPLHSVPASKVSGTDELKAAQSQLAAKGEVHKYENREAKRLKKDNSNTDTNGIGVSTGESGVVVVETESEVDFVNDGHRWRKYGQKMVKGNTNPRHYYRCSYLGCPAKRRVERSPREPKNVISTYEGQHDHENPAERGVTHNTAKNTQTKGINGKMKTQSGGNTVYAETGECSYSHSKSWLNKESNSKPNYDSIFRAVVLPDIGLKCELNEEEQQNEDPSTKEDSVSNAMMLDPSSEVPSRSNEHVEDEVRTTSEGINDCANVVTGHDTSSTTSEFDKESTSDTEPFQS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02203 502 Pfam WRKY DNA -binding domain 109 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g02203 502 Pfam WRKY DNA -binding domain 288 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g02203 502 SUPERFAMILY WRKY DNA-binding domain 106 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g02203 502 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 435 IPR044810 GO:0003700
Car02g02203 502 MobiDBLite consensus disorder prediction 1 16 - -
Car02g02203 502 MobiDBLite consensus disorder prediction 423 502 - -
Car02g02203 502 MobiDBLite consensus disorder prediction 77 100 - -
Car02g02203 502 ProSiteProfiles WRKY domain profile. 282 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g02203 502 PANTHER WRKY TRANSCRIPTION FACTOR 1 1 435 - -
Car02g02203 502 SMART WRKY_cls 108 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g02203 502 SMART WRKY_cls 287 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g02203 502 MobiDBLite consensus disorder prediction 453 467 - -
Car02g02203 502 MobiDBLite consensus disorder prediction 468 484 - -
Car02g02203 502 MobiDBLite consensus disorder prediction 340 373 - -
Car02g02203 502 SUPERFAMILY WRKY DNA-binding domain 281 347 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g02203 502 MobiDBLite consensus disorder prediction 434 452 - -
Car02g02203 502 MobiDBLite consensus disorder prediction 352 373 - -
Car02g02203 502 ProSiteProfiles WRKY domain profile. 103 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g02203 502 MobiDBLite consensus disorder prediction 185 226 - -
Car02g02203 502 Gene3D WRKY domain 271 348 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g02203 502 Gene3D WRKY domain 99 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g02203 502 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02203 Car-Chr2 52179700 52181649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02203 81 431 WRKY Transcription Factor Family AT2G04880 37.709 1.17e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car02g02203 WRKY 4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02203 K18834 - gmx:100781219 458.373