Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02200 ATGTCTGTGAATGGAAGAGTTTCAGGTTCTAATGGAAGATTGTCACAAAAACTGAAGTCTTCTTGGAAAGGAAATGAATCTATGCATGTGTCAAATTCTAGTAGAACATGTAGGAAAAAACTGTTTCTGTTTTGGGTTTTTTGTGTTGTTGTTGCTTTGTGGAGTGTTTGGTTTATTATCTTTAGTTTCAATAGTAGTAAACATTTGATTAAAGAAACAGCTTGTGAAAAGAGTGAACAAACCTTGCTACAACGTTACAATGTCAGTAGGAAACAGTTTCATGCTTTGGCTTCCTTGTTCTCTGGATCAGATCAGATTTTGTCCAACTGTATTGATGAAGAAAAGCTTCAAATGCTATTAAGCATTGGCATAGTCAACACTCCAAAGTCAATGTGTCCAAAGAACCAGGAGTTAGAGAAGGAGCATAGATGTGTTGAAGACTCTCCAGAATCTATGGAACAATGTCCAATTCTCGATGATTTTGTCCAGACGAGGATTGGATTATCATTCCCTTGGAAAACATTGGTCTTTGCAATTCAGGATCATGCAAATTCATATACTTTAATTAAAGGATGCTTTTGGGTCCTTATTGGAACTATAATGTCACACAAGTTGTCTGGCTTCTATTTACATAGAAGGAGTCAAAAGCAGAAGCTAGTTCCGGAGCATCCAGCTACTCAACAAAAGCGGCTTCAACATTTTAAGCATGGTCATTCAAAGGCCGGGAGGTGGAGAAAAAACTTGCTAGTTATTTTTGTGACACTTGGAATTGTTGGTTCCGCGTGGTTATTTTGGCACCTGAATGCAGACATTGTGCAAAGAAGAGAAGCAATGCTTGCCACTATGTGTGATGAGCGAGCACGTATGCTGCAAGATCAGTTCAACGTGAGCATGAACCATGTTCATGCTCTTGCTATTCTTGTGTCTACATTTCACCATGGTAAACATCCTTCTGCAGTGGATCAGAAAATATTTGGAGAGTATACAGAGAGTACGGCATTTGAGAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTCCATTCTGATAGAACGCATTTTGAGAAGCAGCATGGGTGGACAATTAAGAAAATGGAAACGGAGAACGAGGCATTAGTTCAAGATTGTATTCCAGAAAACTTGGATCCGGCGCCCATTCAAGATGAATATGCACCAGTGATATTTGCTCAAGAAACAGTTTCTCATATTGTATCTATTGACATGATGTCGGGAAAGGAGGATCGGGAGAATATTTTGCGAGCAAGGGCATCTGGAAAGGGTGTTCTGACATCCCCTTTTAAACTGTTAAAGTCCAATCACCTCGGTGTTGTACTTACATTTGCTGTTTATGACTCTAATCTTCCACCAAATGCTACACCCGAACAGCGTATTGAAGCTACTGTGGGGTATCTGGGCGCATCTTACGATGTTCCATCACTGGTGGACAAACTTCTACACCAACTTGCAAGCAAGCAAACCATTGTTGTTAATGTGTATGACACAACTAATGCATCTGCACATATTACAATGTATGGTATTGATGTTCCTGATACTGGCCTACTACACATAAGCAGTCTAGATTTCGGGGATCCGCTACGAAAACATGAGATGCACTGCAGGTTCAAGCATAAGCCTCGACTACCTTGGACGGCAATCAATGCATCTGGTGGGGTATTTGTTATAACCTTGCTTCTGGGACATATATTTTATGCAGCGATAAACCGTATAGCCAAAGTGGAGGAAGACTGTCGTAAAATGGAAGAGCTGAAAGTTCGTGCCGAAGCTGCAGATGTCGCAAAATCTCAGTTTCTTGCGACTGTTTCACACGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACAGACCTTGATGACAATCAAATGGATTATTCACAAACTGCTCACGAGAGTGGTAAAGATCTTATATCTGTCATAAATGAGGTTCTAGATCAAGCTAAGATCGAGGCAGAGAAGCTTGAACTTGAAGCTGTAGCTTTTGATCCACACACTATTCTAGATGAAGTTCTATCTCTTTTTGCTGAGAAGTCCAATGAAAAAGGAATTGAGTTGGCTGTTTATGCATCCAATCAAGTACCTAAAGTTGTCATTGGCGATCCTAAACGCTTCCGACAAATTATTACCAATCTTGTTGGCAATTCACTTAAGTTCACTCATGATAAAGGACATGTTTTTGTCTCGATTCATCTTGCAAATGAAGTGAAGAATCCACTTCATGTCATGGATGCGGTGCTGAGAGAAGGCTTAAACATGAATCAGGACATATCCGAAAGAACATGTAATACATTGAGTGGATTTCCTGTAGGCAATAGATGGAAAAGCTGGGAAAATTTCAAAAAGTTAAATAGCATAAATTTGATGGATGAGCCTGAAACTATTCAACTACTAGTAACTGTTGAGGACACTGGTATAGGAATTCCTAACGACGCACAAAGCCGCATATTTACACCTTTCATGCAGGCCGATAGCTCCACTTCTCGAACATACGGTGGAACCGGAATAGGACTTAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGTGAAATCGGATTTGTAAGCGAGCCTGGAATTGGAAGTACGTTTTCATTTACCGGAAATTTCAGAAAAGGAGAAGCCAAATCTCTGGATGCAAAGTGGCACAAGTACAATCCTTTTGTCTCTGAGTTCCAAGGGTTGAGAGCATTAGTAATAGATAGAAGAAAAATCCGGGCCGAGGTTACACGTTATCACCTGCAGAGATTGGGGATGTCTGTCAATGTAAATACCAGTCTTCAATCAGCATGCTTTTGTCTATCTGATACTTGCAACACAAGTGTGTCGATGCAGTTGGCCATGATTCTTATAGATATAGATTCTTGGGACAAGGAAAGTAGTAGTATCTTATACTCAATCAAGAAACAAAGACAAAATGGCATCAAAGTGGACACATTAAACTTTCCAAAGATTTTTCTCCTGGCCACCCGCCTTAGCCCCGGTGAACGCGACGAGCTGAAGTCAGTTGGTATTGTAGATGATGTTCTAATGAAGCCTCTTTGGTTAAGTGTTTTGATTTGCTACTATAGAGAATCCCTCAAAACAGGGAAGAAACAAATTAATAGAAAGAAAATATCCGAACTTGAAAATTTATTAATACACAAACGAATTTTGGTGGTCGATGATAATGCAGTAAACCGAAAAGTTGCACAAGGCGTTCTTCGGAAATATGGGGCAGTAGTTACATGTGTGGAGGGTGGCAGGGATGCTCTAAAGTTGCTTAAACCGCCGCATAATTTTAACGCATGCTTCATGGATCTTCAAATGCCAGAAATGGATGGTTTTGAGGTGACAAGGCAAATCCGCTTTATGGAGAGCGAGGTGAATGAGAAAATCGCATGTGGCCAAGCATCAATGGAGATGTTTGGTAACATCTCTTATTGGCACACTCCAATACTAGCTATGACTGCCGATGTAACTCGGTCTTCAAATGAAGAATGCAAAAAGTGTGGGATGGATGACTACGTTTCAAAACCATTCGAAGAAGAGAAGCTCTATATGGCAGTCGCACGTGTCTTCAATTTTGGTTCATAA 3615 0.4041 MSVNGRVSGSNGRLSQKLKSSWKGNESMHVSNSSRTCRKKLFLFWVFCVVVALWSVWFIIFSFNSSKHLIKETACEKSEQTLLQRYNVSRKQFHALASLFSGSDQILSNCIDEEKLQMLLSIGIVNTPKSMCPKNQELEKEHRCVEDSPESMEQCPILDDFVQTRIGLSFPWKTLVFAIQDHANSYTLIKGCFWVLIGTIMSHKLSGFYLHRRSQKQKLVPEHPATQQKRLQHFKHGHSKAGRWRKNLLVIFVTLGIVGSAWLFWHLNADIVQRREAMLATMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAVDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRTHFEKQHGWTIKKMETENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYDSNLPPNATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAHITMYGIDVPDTGLLHISSLDFGDPLRKHEMHCRFKHKPRLPWTAINASGGVFVITLLLGHIFYAAINRIAKVEEDCRKMEELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDNQMDYSQTAHESGKDLISVINEVLDQAKIEAEKLELEAVAFDPHTILDEVLSLFAEKSNEKGIELAVYASNQVPKVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSIHLANEVKNPLHVMDAVLREGLNMNQDISERTCNTLSGFPVGNRWKSWENFKKLNSINLMDEPETIQLLVTVEDTGIGIPNDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGNFRKGEAKSLDAKWHKYNPFVSEFQGLRALVIDRRKIRAEVTRYHLQRLGMSVNVNTSLQSACFCLSDTCNTSVSMQLAMILIDIDSWDKESSSILYSIKKQRQNGIKVDTLNFPKIFLLATRLSPGERDELKSVGIVDDVLMKPLWLSVLICYYRESLKTGKKQINRKKISELENLLIHKRILVVDDNAVNRKVAQGVLRKYGAVVTCVEGGRDALKLLKPPHNFNACFMDLQMPEMDGFEVTRQIRFMESEVNEKIACGQASMEMFGNISYWHTPILAMTADVTRSSNEECKKCGMDDYVSKPFEEEKLYMAVARVFNFGS 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02200 1204 CDD HATPase_EvgS-ArcB-TorS-like 718 880 - -
Car02g02200 1204 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 713 880 IPR003594 -
Car02g02200 1204 CDD HisKA 601 662 IPR003661 GO:0000155|GO:0007165
Car02g02200 1204 SMART CHASE_2 316 515 IPR006189 -
Car02g02200 1204 Pfam His Kinase A (phospho-acceptor) domain 601 665 IPR003661 GO:0000155|GO:0007165
Car02g02200 1204 SMART REC_2 1062 1196 IPR001789 GO:0000160
Car02g02200 1204 ProSiteProfiles CHASE domain profile. 316 540 IPR006189 -
Car02g02200 1204 Gene3D - 572 664 - -
Car02g02200 1204 Gene3D - 267 319 - -
Car02g02200 1204 Coils Coil 578 598 - -
Car02g02200 1204 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 655 880 IPR036890 -
Car02g02200 1204 ProSiteProfiles Response regulatory domain profile. 909 1040 IPR001789 GO:0000160
Car02g02200 1204 Pfam CHASE domain 319 513 IPR006189 -
Car02g02200 1204 Gene3D - 666 886 IPR036890 -
Car02g02200 1204 CDD REC_hyHK_CKI1_RcsC-like 1064 1196 - -
Car02g02200 1204 MobiDBLite consensus disorder prediction 1 20 - -
Car02g02200 1204 Gene3D - 1058 1202 - -
Car02g02200 1204 SMART HisKA_10 601 666 IPR003661 GO:0000155|GO:0007165
Car02g02200 1204 SUPERFAMILY CheY-like 1062 1201 IPR011006 -
Car02g02200 1204 Pfam Response regulator receiver domain 1064 1196 IPR001789 GO:0000160
Car02g02200 1204 Gene3D CHASE domain 320 547 IPR042240 -
Car02g02200 1204 PANTHER TWO-COMPONENT HISTIDINE KINASE 234 1201 - -
Car02g02200 1204 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 588 667 IPR036097 GO:0000155|GO:0007165
Car02g02200 1204 PANTHER HISTIDINE KINASE 2 234 1201 - -
Car02g02200 1204 SUPERFAMILY CheY-like 904 1038 IPR011006 -
Car02g02200 1204 ProSiteProfiles Histidine kinase domain profile. 608 885 IPR005467 -
Car02g02200 1204 Coils Coil 651 671 - -
Car02g02200 1204 ProSiteProfiles Response regulatory domain profile. 1063 1200 IPR001789 GO:0000160
Car02g02200 1204 SMART HKATPase_4 713 885 IPR003594 -
Car02g02200 1204 PRINTS Bacterial sensor protein C-terminal signature 810 824 IPR004358 GO:0016310|GO:0016772
Car02g02200 1204 PRINTS Bacterial sensor protein C-terminal signature 828 838 IPR004358 GO:0016310|GO:0016772
Car02g02200 1204 PRINTS Bacterial sensor protein C-terminal signature 845 863 IPR004358 GO:0016310|GO:0016772
Car02g02200 1204 PRINTS Bacterial sensor protein C-terminal signature 869 882 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02200 Car-Chr2 52154664 52162734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02200 42 1200 Miscellaneous Gene Families AT5G35750 59.847 0.0 1363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car02g02200 CHASE 3.3e-34 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02200 K14489 - gmx:100805107 1839.31