LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car02g02186	ATGGAATACCTTTATGGATTTGCGTCTTCTATTTCAAGAGATTTGGTGTGCGGCGTGATAGGTCAGTTAAGTTATCCCTGCTGCTTCAACAATTTTGTTAAAGACCTTGCAAAAGAAGAAGGTAATTTGGCTGCAACAAGAGCTAGTGTCCAAGACCGTGTTACACGAGCCAAGAAGCAAACTAGAAACACTGCTGAGGTTGTTGATAAGTGGTTGAAGGATGCTAACATTGTCATGGACAATGTTGATCAGTTACTACAAATGGCAAAAACAGAAAAGAACTCTTGTCTCGGGAACTGTCCAAATTGGATTTGGCGATACCGTGTAGGCAGGAAGTTAGCAAAGAAAAAAAGGGACCTTACATTGTGCATTAAAGAAGGTAGACAATATATACAGATTGAACACCCTGCTGCACTTTCAAGCAATTTTTCTTCTGATAAATGTTGGGAGTTTGATAGTAGAAAACCTGCATATGAGGAACTTATGTGTGCTTTGGAAGATGATGAGGTTATTATGATTGGATTGTATGGGATGGGGGGTTGTGGTAAAACAATGCTTGCAAAAGAAGTAGGTAAGAGAGCTGGTCATCTTTTTGATCAAGTGCTTTTTGTGCCTATATCTAGTACTGTAGAAGTGGAAAGGATCCAAGAAAAAATTGCAGGCTCTCTTGAATTTGAATTCCAAGAAAAAGACGAGATGGACAGATCACAACGCTTATGCATGAGGTTATCACAAGAAGAAAGGGTTCTTGTGATTCTGGATGATGTGTGGCAAATGCTAGATTTTGATGCCATAGGGATTCCTTCTAGTGAGCATCATAGAGGTTGCAAAGTTCTCATTACCAGTAGATCAGAAGCAGTTTGTACTTTGATGGATTGCCAGAAAAAAATTCACCTGTCAACATTAACCAACGAAGAAACGTGGGATCTTTTCCAAAAGCAAGCACTCATATCTGAAGGCACTTGGATTACTGTAAAGAATTTGGGTAAAGAAATTTCAAATGAATGTAAAGGCTTGCCTGTCGCCATTGTAGCAGTGGCTAGCAGCTTAAAAGGCAAGGCGGAGGTAGAATGGAAGGTTGCATTGGATAGATTGAGAAGTTCAAAACCTGTTAATATTGAAAAAGGTTTGCAAAACCCGTACAAGTGCTTGCAGTTAAGCTATGATAATTTGGACACCGAAGAGGCCAAGTCACTTTTCTTGTTGTGTTCTGTGTTTCCTGAAGATTGTGAAATTCCTGTTGAGTTTTTAACTAGGTCTGCAATAGGGCTAGGCATTGTTGGAGAAGTTCGCTCATATGAAGGGGCAAGGGATGAAGTGAGTGCGGCTAAAAATAAGCTCATAAGTTCTTGTTTGTTGCTGGATGTTGATGAAGGAAAATGTGTCAAAATGCATGACTTAGTTCGCAATGTAGCCCATTGGATTGCGGAGAAGGCGATTAAGTGTACCTCAGAAAAGGATATGACTTTGGAACATACTTCATTAAGATATCTATGGTGTGAGAAATTTCCAAATAGTTTGGATTGTTCCAATCTTGACTTTCTACACATTCACACATATACACAAGTATCAGATGAAATTTTCAAAGGAATGAGAATGCTCAGAGTTTTGTTTCTTTACAACAAGGGTCGGGAGAGAAGGCCATTGTTGACTACATCATTAAAATTATTGATGAATCTTCGTTGCATAGTCCTGAGTAAATGGGATTTAGTTGACATCTTATTTGTGGGAGACATGAAGAAACTTGAAAGTCTTACATTGTGTGATTGTTCATTCCTTGAATTACCTGATGTGATTACACAACTGACAAACTTGAGATTGTTGGATTTGTCAGAATGTGACATGAAAATGAATCCGTTTGAAGTAATTGGGAAACACCCACAGCTAGAAGAACTGTACTTTGCTGATCGTAGATCGAAATGGGAACTTGAATTCTTAAAAAAGTTTAGTGTCCCACAAGTGTTACAAAGGTATCAAATACAGTTAGGAAGTATGTTTGCCGGTTTCCAGCAAGAGTTTCTCAATCATCGCAGAACTTTGTTTCTCAGTTATTTGGATACATCTAATGCTGCGATTAAGGATTTGGCCAAAAAAGCAGAGGTCTTGTGTGTAGCATGTATCGAGGGAGGTGCTAAAAATATTATCCCTGACATATTTCAAATAGAAGGAGGAAGTATGAATCATTTAACTGAGCTTTTGATACGTGATTCTAAGGGGATAGAGTGTTTGGTTGACACTTGTCTGATCAACGTAGGAACTCTCTTCTGCAAGTTGCATTGGCTAAGGATTGAGCACATGGAGCATTTGGGAGCTTTATACAATGGTCGAAGAATGCCTCTTGGTGGTCATTTTGAGAATTTAGAAGACCTATATATAAGTAATTGTCCAAAGCTAACATGTCTCTTCACACTTGCAGTTGCTCAAAATCTGGCACAACTGGAGAAGTTAGAAGTATTATCTTGTCCTGCACTGAAACATATACTAATtgatgatgatgatgatgatagtgaggagataagtgcatatgatCACAGACTTCTGTTTCCAAAATTAAAAAAGCTTCATGTTAGAGAGTGTGGTATGCTGGAATACATAATCCCAATCACTTTAGCTCAAGGCCTTGTACAATTGGAGAGTATAGAAATCGTATGTAATCATAAGTTGAAATACATATTTGGCCAAAGCACACACAAAGATGGTCAGAATCAAAATGAACTCAAGATCGAGCTTTTGGCCCTGGAAGAGCTTACTCTTGTTCTCTTGCCAAATATCAATAGCATTTGTCTAGAAGATTGTTATCTCATGTGGCCATCCTTGTGTCAATTCAATTTGCAAAATTGTGGAGAGTTTTTCATGGTGTCTATCAATACTTGCATGGCTTTACACAACAATCAGATAATCAATGAAGCTTCACGTCAAATTGTGCAAAATATAAAAGAAGTTCGAGTCAATAACTGTGAGTTAGAAGGCATCTTTCAGCTAGCAGGACTATCCATTGATGGAGAAAAAAATCCACTGACATCATGTTTGGAAATGTTGTATTTGGAGAATCTACCTCAGCTCAGGTATGTATGTAAGAGTGATGTAGTAGAATCAACGAACCTCCAATTCCAAAATCTTCAACAAATGGAGATATGTGGGTGTAGAAGGTTAAAATTTATCTTCTCATCCTGTATGGCAGGAGGGTTACCTCAATTGAAAGCGCTAAAGATAGAAAAGTGCAATCAGCTAGATCAAATCGTTGAGGATATTGGCACTGAAGTTCCCTTAGGATCATTTGGTTTTCCCAGCCTTATAAGGTTAACACTAATATGTTACGCCTGCgaggtttaa	3333	0.3774	MEYLYGFASSISRDLVCGVIGQLSYPCCFNNFVKDLAKEEGNLAATRASVQDRVTRAKKQTRNTAEVVDKWLKDANIVMDNVDQLLQMAKTEKNSCLGNCPNWIWRYRVGRKLAKKKRDLTLCIKEGRQYIQIEHPAALSSNFSSDKCWEFDSRKPAYEELMCALEDDEVIMIGLYGMGGCGKTMLAKEVGKRAGHLFDQVLFVPISSTVEVERIQEKIAGSLEFEFQEKDEMDRSQRLCMRLSQEERVLVILDDVWQMLDFDAIGIPSSEHHRGCKVLITSRSEAVCTLMDCQKKIHLSTLTNEETWDLFQKQALISEGTWITVKNLGKEISNECKGLPVAIVAVASSLKGKAEVEWKVALDRLRSSKPVNIEKGLQNPYKCLQLSYDNLDTEEAKSLFLLCSVFPEDCEIPVEFLTRSAIGLGIVGEVRSYEGARDEVSAAKNKLISSCLLLDVDEGKCVKMHDLVRNVAHWIAEKAIKCTSEKDMTLEHTSLRYLWCEKFPNSLDCSNLDFLHIHTYTQVSDEIFKGMRMLRVLFLYNKGRERRPLLTTSLKLLMNLRCIVLSKWDLVDILFVGDMKKLESLTLCDCSFLELPDVITQLTNLRLLDLSECDMKMNPFEVIGKHPQLEELYFADRRSKWELEFLKKFSVPQVLQRYQIQLGSMFAGFQQEFLNHRRTLFLSYLDTSNAAIKDLAKKAEVLCVACIEGGAKNIIPDIFQIEGGSMNHLTELLIRDSKGIECLVDTCLINVGTLFCKLHWLRIEHMEHLGALYNGRRMPLGGHFENLEDLYISNCPKLTCLFTLAVAQNLAQLEKLEVLSCPALKHILIDDDDDDSEEISAYDHRLLFPKLKKLHVRECGMLEYIIPITLAQGLVQLESIEIVCNHKLKYIFGQSTHKDGQNQNELKIELLALEELTLVLLPNINSICLEDCYLMWPSLCQFNLQNCGEFFMVSINTCMALHNNQIINEASRQIVQNIKEVRVNNCELEGIFQLAGLSIDGEKNPLTSCLEMLYLENLPQLRYVCKSDVVESTNLQFQNLQQMEICGCRRLKFIFSSCMAGGLPQLKALKIEKCNQLDQIVEDIGTEVPLGSFGFPSLIRLTLICYACEV	1110

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car02g02186	1110	CDD	AAA	175	282	-	-
	Car02g02186	1110	PANTHER	-	8	644	-	-
	Car02g02186	1110	PANTHER	-	655	842	-	-
	Car02g02186	1110	PANTHER	PHOSPHATASE, PUTATIVE-RELATED	8	644	-	-
	Car02g02186	1110	PRINTS	Disease resistance protein signature	600	616	-	-
	Car02g02186	1110	PRINTS	Disease resistance protein signature	336	350	-	-
	Car02g02186	1110	PRINTS	Disease resistance protein signature	243	257	-	-
	Car02g02186	1110	PRINTS	Disease resistance protein signature	172	187	-	-
	Car02g02186	1110	Gene3D	-	387	474	IPR036388	-
	Car02g02186	1110	PANTHER	PHOSPHATASE, PUTATIVE-RELATED	846	1082	-	-
	Car02g02186	1110	PANTHER	PHOSPHATASE, PUTATIVE-RELATED	655	842	-	-
	Car02g02186	1110	SUPERFAMILY	L domain-like	463	947	-	-
	Car02g02186	1110	Gene3D	-	143	298	IPR027417	-
	Car02g02186	1110	Gene3D	Ribonuclease Inhibitor	847	1106	IPR032675	-
	Car02g02186	1110	Gene3D	Ribonuclease Inhibitor	479	836	IPR032675	-
	Car02g02186	1110	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	147	403	IPR027417	-
	Car02g02186	1110	Gene3D	-	301	386	IPR042197	-
	Car02g02186	1110	Pfam	NB-ARC domain	166	390	IPR002182	GO:0043531
	Car02g02186	1110	PANTHER	-	846	1082	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car02g02186	Car-Chr2	52062150	52066230	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car02g02186	173	625	WRKY Transcription Factor Family	AT5G45050	24.031	1.93e-10	63.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car02g02186	-		-	cam:101501248	2164.04