Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02162 ATGTCTTTAAGCTTAAGTACTCTATCACTTTCTCACAAAATCTTCTCCCTAACCTTGCTTCTTCTCTCAATAAACTTTATTTTCTTTTTTCCATGTTGTAACTCTCTTGATGAACAAGGACAAGCTCTTATTACATGGAAGGAAAGTTTGAACATGAATTCAGATGCATTAGCATCATGGAATCTTTCAAACCAAACACCATGCAACTGGTTTGGTGTGCACTGCAACTTACAAGGAGAGGTGGTTGAGATAAACTTGAAGTCATTGAACTTGCAAGGCTCATTGCCATCAACTTTTCAACCACTCATGTCCTTGAAAGTTCTTATCCTCTCATCAAATAACATCACAGGAACAATTCCAAAAGAAATTGGAGACTGTCAAGAACTCATTGTCATTGATCTCAGTGAAAATTCTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTAAGCAAGCTGCAAAGTTTGGCTCTTCATGCAAACTCTCTTGAAGGAAATATTCCATTCAAGATAGGAAATTTATCAAGTCTTGTGAACTTGACACTCTATGACAATAAATTGAGTGGTGAAATTCCAAAGAGTATTGGTTTTTTAAGTAAGCTTCAAATATTGAGAGCAGGAGGGAATACAAATCTTCAAGGTGAGATTCCAAGGGAGATTGGAAACTGCACCAACTTGGTCACGTTAGGCCTTGCGGAAACCGGCATTTCCGGTAGCCTTCCTTCTTCAATAGGGATGTTGAAAAGAATTCAGACAATAGCTATTTACACAACTCAGATGTCAGGCTCTATACCTGAAGAGATAGGTAATTGCAGTGAATTGCAACACCTGTACTTGTATCAGAACTCAATTTCTGGTTCAATTCCACATCAAATTGGAGAACTCAGCAGGATTCAGAGTCTACTTTTATGGAAAAACAATTTAACAGGGAGAATACCAGAAGAGCTTGGAAAATGTAAAGAGCTCAGTGAGATAGACTTGTCAGAGAATCTTCTCACAGGTAGTATACCAATCAGTTTTGGAAAGCTATCAAATATACAAGTACTTCAGCTGAGTAATAATCAGTTGTCAGGTATTATACCACCCGAAATTTCAAACTGCACTTCTCTGACTGAGCTGGAACTTGACAACAATGCTATTTCTGGTGAGATTCCTTCTGTTATTGGAAAATTGAGAAGCTTAACCCTTTTCTATGCATGGAAGAACAAACTAACAGGAAAAGTCCCAAGTAGTCTTTCAGAGTGTCAAGATCTTCAGGAACTTGATCTTTCATACAACAAGTTAACTGGTTCTATACCGAAACAACTATTTCAGTTGAGGAATCTCACTCAACTTATGCTTCTTTCCAATGATTTGTCAGGATTAATTCCACCTGATATAGGTAACTGCACAAGTCTCAACAGGTTGAGGTTAAATCAGAATAGATTTGTTGGTACCATTCCATCTGAGATTGCCAACTTGAAGAATTTGTGTTTTTTGGACATGAACAACAATCATCTTGTAGGGGAGATTCCATCTCAGTTCTCTGGTCTTAGCAAACTTGGAGTGATTGATCTCTCACACAACAAGCTCTCGGGGAATTTAGACGCTCTTTCTAAACTTCAGAATCTTGTTTCTTTAAATGTTTCCTTCAATGAATTCTCTGGTGAATTGCCTAACACCACACTCTTCTGGAAACTCCCTCTCAGTGATCTCACTGGAAATAAAGGTCTTCACATTCCAGATGGTATTGTAACTTCAGCTAACAGAACAAGAACCAAAGGTCATGCCAGAATATCAATGAATGTTGTGTTCTTCATTCTCTTATGCATCAGTGTAGTACTAACACTTCTCATAATCTATGTCATGGTTCGCGTTCTTATTATGAACGATTGGGTGATGACTTTGTATTACCATTATGAATTCTCTATTAATAACATTGTCAAGAAACTCAAAGAATCCAATATAATTGAAGACGGAAGCTCTGGAGTTCTGTACAAGGTAACAATTCCAAAAGGCCATATACTAGCAGTTAAAAGGGTTTGGTCATCAGCAGATTCTGGAGCGTTTAACTCTGAAATTCAAATGTTACGTTCAATCAAACATAAGAATATCATCAAGCTTCTTGGTTGGGGATCCAACAAGAAAATGATGCTGCAGTTTTATGAATACTTCCCTAGTCTGAGCTCATTGCTTCATGGTTCAAAAAAGGGGAAACTAGAATGGGACACCAGATATGAAGCCATCTTAGGCCTGGCTCAAGCACTTTCATATCTACACCATGATTGTGTGCCTTCTATATTGCATGGAGATGTCAAAACAACAAATGTTTTATTAGGTCCTGGCTGGCATCCTTACCTTGCTGATTTTGGCATGGCTAGATTTGCAAGTGAAAAAGGCAATAAGACTAATTCCAAGCCATTTCAAAGACCCTCCTACTCCAATAGTTCCTATGGATACATAGATCCTGAGCTCGACTCAAAGCAGAAGATCAATGAGAAAACAGATGTGTACAGTTTCGGTGTTGTCCTACTTGAGGTGCTGACAGGAAGGCACCCATTAGACCCAACTCTGCCAGAAGGTACACACTTGGTTCAGTGGGTTAACAATCATTTGGCTAGCAACGGAGACCCATCTAAAGTTCTTGACTCAAAGCTGAGAAAGACTACTGAGCCTACTACTATGCATGAAATACTACAAACTCTAGCTGTGTCATTACTATGTGTCAATACAAGAGCTTATGAACGTCCAACAATGAAGGACGCTCTTGCAATGCTCAACCAAATTCGATATTTTGTTGAGCCCTCAAGGATGGAGGATTCTGATGTATTGAAGGAATTTTCAATAGACCAAAGAGAGTGTGTAGCTTCACATGTACCTTATATCTCTTGCTTCAATTTCTCAATCTGTTGA 2892 0.3852 MSLSLSTLSLSHKIFSLTLLLLSINFIFFFPCCNSLDEQGQALITWKESLNMNSDALASWNLSNQTPCNWFGVHCNLQGEVVEINLKSLNLQGSLPSTFQPLMSLKVLILSSNNITGTIPKEIGDCQELIVIDLSENSLFGEIPEEICRLSKLQSLALHANSLEGNIPFKIGNLSSLVNLTLYDNKLSGEIPKSIGFLSKLQILRAGGNTNLQGEIPREIGNCTNLVTLGLAETGISGSLPSSIGMLKRIQTIAIYTTQMSGSIPEEIGNCSELQHLYLYQNSISGSIPHQIGELSRIQSLLLWKNNLTGRIPEELGKCKELSEIDLSENLLTGSIPISFGKLSNIQVLQLSNNQLSGIIPPEISNCTSLTELELDNNAISGEIPSVIGKLRSLTLFYAWKNKLTGKVPSSLSECQDLQELDLSYNKLTGSIPKQLFQLRNLTQLMLLSNDLSGLIPPDIGNCTSLNRLRLNQNRFVGTIPSEIANLKNLCFLDMNNNHLVGEIPSQFSGLSKLGVIDLSHNKLSGNLDALSKLQNLVSLNVSFNEFSGELPNTTLFWKLPLSDLTGNKGLHIPDGIVTSANRTRTKGHARISMNVVFFILLCISVVLTLLIIYVMVRVLIMNDWVMTLYYHYEFSINNIVKKLKESNIIEDGSSGVLYKVTIPKGHILAVKRVWSSADSGAFNSEIQMLRSIKHKNIIKLLGWGSNKKMMLQFYEYFPSLSSLLHGSKKGKLEWDTRYEAILGLAQALSYLHHDCVPSILHGDVKTTNVLLGPGWHPYLADFGMARFASEKGNKTNSKPFQRPSYSNSSYGYIDPELDSKQKINEKTDVYSFGVVLLEVLTGRHPLDPTLPEGTHLVQWVNNHLASNGDPSKVLDSKLRKTTEPTTMHEILQTLAVSLLCVNTRAYERPTMKDALAMLNQIRYFVEPSRMEDSDVLKEFSIDQRECVASHVPYISCFNFSIC 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02162 963 Pfam Leucine rich repeat 321 380 IPR001611 GO:0005515
Car02g02162 963 Pfam Leucine rich repeat 394 452 IPR001611 GO:0005515
Car02g02162 963 Pfam Leucine rich repeat 104 163 IPR001611 GO:0005515
Car02g02162 963 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 506 - -
Car02g02162 963 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 502 935 - -
Car02g02162 963 SUPERFAMILY Protein kinase-like (PK-like) 625 921 IPR011009 -
Car02g02162 963 Gene3D Ribonuclease Inhibitor 303 583 IPR032675 -
Car02g02162 963 ProSiteProfiles Leucine-rich repeat profile. 417 439 IPR001611 GO:0005515
Car02g02162 963 SMART LRR_typ_2 102 126 IPR003591 -
Car02g02162 963 SMART LRR_typ_2 174 198 IPR003591 -
Car02g02162 963 SMART LRR_typ_2 415 439 IPR003591 -
Car02g02162 963 SMART LRR_typ_2 487 510 IPR003591 -
Car02g02162 963 SMART LRR_typ_2 534 559 IPR003591 -
Car02g02162 963 SMART LRR_typ_2 295 319 IPR003591 -
Car02g02162 963 SMART LRR_typ_2 343 367 IPR003591 -
Car02g02162 963 Gene3D Ribonuclease Inhibitor 192 291 IPR032675 -
Car02g02162 963 Gene3D Transferase(Phosphotransferase) domain 1 719 943 - -
Car02g02162 963 Pfam Protein kinase domain 648 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g02162 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672|GO:0006468
Car02g02162 963 SUPERFAMILY L domain-like 319 571 - -
Car02g02162 963 Gene3D Phosphorylase Kinase; domain 1 627 717 - -
Car02g02162 963 Gene3D Ribonuclease Inhibitor 36 191 IPR032675 -
Car02g02162 963 PRINTS Leucine-rich repeat signature 418 431 - -
Car02g02162 963 PRINTS Leucine-rich repeat signature 511 524 - -
Car02g02162 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 506 - -
Car02g02162 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 502 935 - -
Car02g02162 963 ProSiteProfiles Protein kinase domain profile. 644 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g02162 963 SMART serkin_6 644 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g02162 963 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Car02g02162 963 ProSiteProfiles Leucine-rich repeat profile. 513 535 IPR001611 GO:0005515
Car02g02162 963 SUPERFAMILY RNI-like 83 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02162 Car-Chr2 51838189 51841879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02162 81 938 Receptor kinase-like Gene Family AT5G56040 47.884 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car02g02162 Pkinase 8.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02162 - - cam:101492613 1894.4